List of interconnect() Examples

Examples of interconnect()

org.openbel.framework.api.BasicPathFinder.interconnect()
{@inheritDoc}
org.openbel.framework.api.PathFinder.interconnect()
Finds all paths, if there are any, that interconnect any pair of {@link KamNode nodes}. @param nodes {@link KamNode KamNode[]}, array of KAM nodes to interconnect, which cannot be null and must contain at least two {@link KamNode KAM nodes} @return a populated {@link SimplePath KamPath[]}, or an empty array if no paths were found @throws InvalidArgument Thrown if sources is null or does notcontain at least two {@link KamNode KAM nodes}, or if any {@link KamNode KAM node} does not exist within the {@link Kam} to traverse

Examples of org.openbel.framework.api.BasicPathFinder.interconnect()

        final PathFinder pathFinder = new BasicPathFinder(kam, maxSearchDepth);


        final Kam.KamNode[] sourceKamNodes =
                convert(kam, sources);


        final org.openbel.framework.api.SimplePath[] paths = pathFinder
                .interconnect(sourceKamNodes);


        final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>(
                paths.length);

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Examples of org.openbel.framework.api.PathFinder.interconnect()

        final PathFinder pathFinder = new BasicPathFinder(kam, maxSearchDepth);


        final Kam.KamNode[] sourceKamNodes =
                convert(kam, sources);


        final org.openbel.framework.api.SimplePath[] paths = pathFinder
                .interconnect(sourceKamNodes);


        final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>(
                paths.length);

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