Package htsjdk.tribble.util

Examples of htsjdk.tribble.util.LittleEndianInputStream.readInt()

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                if(magic != BPTREE_MAGIC_LTH)
                    return false;

                // Get mChromosome B+ header information
                blockSize = lbdis.readInt();
                keySize = lbdis.readInt();
                valSize = lbdis.readInt();
                itemCount = lbdis.readLong();
                reserved = lbdis.readLong();
            }
            else {
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                    return false;

                // Get mChromosome B+ header information
                blockSize = lbdis.readInt();
                keySize = lbdis.readInt();
                valSize = lbdis.readInt();
                itemCount = lbdis.readLong();
                reserved = lbdis.readLong();
            }
            else {
                bdis = new DataInputStream(new ByteArrayInputStream(buffer));
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        LittleEndianInputStream lis = new LittleEndianInputStream(new BufferedInputStream(new FileInputStream("les_test.bin")));
        assertEquals("Binary test file", lis.readString());
        assertEquals(Float.MAX_VALUE, lis.readFloat());
        assertEquals(Byte.MAX_VALUE, lis.readByte());
        assertEquals(Short.MAX_VALUE, lis.readShort());
        assertEquals(Integer.MAX_VALUE, lis.readInt());
        assertEquals(Long.MAX_VALUE, lis.readLong());
        assertEquals(Double.MAX_VALUE, lis.readDouble());
        lis.close();
    }
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               int chromSize;
               long childOffset;

               if(isLeaf) {
                    if(isLowToHigh) {
                        chromID = lbdis.readInt();
                        chromSize = lbdis.readInt();
                    }
                    else {
                        chromID = bdis.readInt();
                        chromSize = bdis.readInt();
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               long childOffset;

               if(isLeaf) {
                    if(isLowToHigh) {
                        chromID = lbdis.readInt();
                        chromSize = lbdis.readInt();
                    }
                    else {
                        chromID = bdis.readInt();
                        chromSize = bdis.readInt();
                    }
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            else
                bdis = new DataInputStream(new ByteArrayInputStream(buffer));

            // Get zoom level information
            if(isLowToHigh){
                reductionLevel = lbdis.readInt();
                reserved = lbdis.readInt();
                dataOffset = lbdis.readLong();
                indexOffset = lbdis.readLong();
            }
            else {
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       fis.readFully(buffer);

       // decode header
       if(isLowToHigh){
           lbdis = new LittleEndianInputStream(new ByteArrayInputStream(buffer));
           magic = lbdis.readInt();

           // check for a valid B+ Tree Header
           if(magic != RPTREE_MAGIC_LTH)
               return false;
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           // check for a valid B+ Tree Header
           if(magic != RPTREE_MAGIC_LTH)
               return false;

           // Get mChromosome B+ header information
           blockSize = lbdis.readInt();
           itemCount = lbdis.readLong();
           startChromID = lbdis.readInt();
           startBase = lbdis.readInt();
           endChromID = lbdis.readInt();
           endBase = lbdis.readInt();
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               return false;

           // Get mChromosome B+ header information
           blockSize = lbdis.readInt();
           itemCount = lbdis.readLong();
           startChromID = lbdis.readInt();
           startBase = lbdis.readInt();
           endChromID = lbdis.readInt();
           endBase = lbdis.readInt();
           endFileOffset = lbdis.readLong();
           itemsPerSlot = lbdis.readInt();
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           // Get mChromosome B+ header information
           blockSize = lbdis.readInt();
           itemCount = lbdis.readLong();
           startChromID = lbdis.readInt();
           startBase = lbdis.readInt();
           endChromID = lbdis.readInt();
           endBase = lbdis.readInt();
           endFileOffset = lbdis.readLong();
           itemsPerSlot = lbdis.readInt();
           reserved = lbdis.readInt();
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