List of haveABCTopology() Examples

Examples of haveABCTopology()

org.cipres.treebase.domain.tree.PhyloTreeNode.haveABCTopology()
@param n1 another node in the same tree @param n2 another node in the same tree @return whether n1 and n2 are more closely related to each other than either is to this node

Examples of org.cipres.treebase.domain.tree.PhyloTreeNode.haveABCTopology()

      PhyloTreeNode c;
      do{ c = nodes.someElement();}
      while (c.getTaxonLabel()==null);      
      
      searchResult = false;
      if (c.haveABCTopology(a, b)) {
        TaxonVariant as = a.getTaxonLabel().getTaxonVariant();
        TaxonVariant bs = b.getTaxonLabel().getTaxonVariant();
        TaxonVariant cs = c.getTaxonLabel().getTaxonVariant();


        logger.debug("Searching for trees with a=" + as + ", b=" + bs + ", c=" + cs);

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