Examples of formatLong()

Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

132
133
134
135
136
137
138
139
140
141
142
        long intergenicReadCount = th.getNumIntergenicReads();
        readsOrigin.addRow("Exonic: ", sdf.formatLong(exonicReadCount) + " / " +
                sdf.formatPercentage( (100.*exonicReadCount) /  totalReadCount ));
        readsOrigin.addRow("Intronic: ", sdf.formatLong(intronicReadCount) + " / " +
                sdf.formatPercentage( (100.*intronicReadCount) /  totalReadCount ));
        readsOrigin.addRow("Intergenic: ", sdf.formatLong(intergenicReadCount) + " / " +
                sdf.formatPercentage( (100.*intergenicReadCount) /  totalReadCount ));
        summaryKeeper.addSection(readsOrigin);

        //TODO: fix this in case of SE reads
        /*if (computeCountsTask.getLibraryProtocol() != LibraryProtocol.NON_STRAND_SPECIFIC) {
View Full Code Here

Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatLong()

157
158
159
160
161
162
163
164
165
166
167
        summaryKeeper.addSection(transcriptCoverage);

        StatsKeeper.Section junctionAnalysisSection = new StatsKeeper.Section("Junction analysis");
        long numReadsWithJunctions = th.getNumReadsWithJunctions();
        junctionAnalysisSection.addRow("Reads at junctions:", sdf.formatLong(numReadsWithJunctions));
        if (numReadsWithJunctions > 0) {
            List<JunctionInfo> junctionList = th.computeSortedJunctionsMap();

            int count = 0;
            for(int i = junctionList.size() -1; i >= 0 && count <= 10; i--){
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.