Examples of formatDecimal()

Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatDecimal()

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            if (numMismatches > 0) {
                indelsSection.addRow("Mismatches",sdf.formatDecimal(numMismatches));
            }
            //indelsSection.addRow("Total reads with indels", sdf.formatInteger(numIndels));
            if (numIndels > 0) {
                indelsSection.addRow("Insertions",sdf.formatDecimal(numInsertions) );
                indelsSection.addRow("Deletions",sdf.formatDecimal(numDeletions) );
                indelsSection.addRow("Homopolymer indels",sdf.formatPercentage(homopolymerIndelFraction * 100.0) );
            }

            summaryStatsKeeper.addSection(indelsSection);
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatDecimal()

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                indelsSection.addRow("Mismatches",sdf.formatDecimal(numMismatches));
            }
            //indelsSection.addRow("Total reads with indels", sdf.formatInteger(numIndels));
            if (numIndels > 0) {
                indelsSection.addRow("Insertions",sdf.formatDecimal(numInsertions) );
                indelsSection.addRow("Deletions",sdf.formatDecimal(numDeletions) );
                indelsSection.addRow("Homopolymer indels",sdf.formatPercentage(homopolymerIndelFraction * 100.0) );
            }

            summaryStatsKeeper.addSection(indelsSection);

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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatDecimal()

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        }*/


        TranscriptDataHandler transcriptDataHandler = computeCountsTask.getTranscriptDataHandler();
        StatsKeeper.Section transcriptCoverage = new StatsKeeper.Section("Transcript coverage profile");
        transcriptCoverage.addRow("5' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianFivePrimeBias()));
        transcriptCoverage.addRow("3' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianThreePrimeBias()));
        transcriptCoverage.addRow("5'-3' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianFiveToThreeBias()));

        summaryKeeper.addSection(transcriptCoverage);

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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatDecimal()

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        TranscriptDataHandler transcriptDataHandler = computeCountsTask.getTranscriptDataHandler();
        StatsKeeper.Section transcriptCoverage = new StatsKeeper.Section("Transcript coverage profile");
        transcriptCoverage.addRow("5' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianFivePrimeBias()));
        transcriptCoverage.addRow("3' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianThreePrimeBias()));
        transcriptCoverage.addRow("5'-3' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianFiveToThreeBias()));

        summaryKeeper.addSection(transcriptCoverage);

        StatsKeeper.Section junctionAnalysisSection = new StatsKeeper.Section("Junction analysis");
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Examples of org.bioinfo.ngs.qc.qualimap.gui.utils.StringUtilsSwing.formatDecimal()

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        TranscriptDataHandler transcriptDataHandler = computeCountsTask.getTranscriptDataHandler();
        StatsKeeper.Section transcriptCoverage = new StatsKeeper.Section("Transcript coverage profile");
        transcriptCoverage.addRow("5' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianFivePrimeBias()));
        transcriptCoverage.addRow("3' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianThreePrimeBias()));
        transcriptCoverage.addRow("5'-3' bias:", sdf.formatDecimal(transcriptDataHandler.getMedianFiveToThreeBias()));

        summaryKeeper.addSection(transcriptCoverage);

        StatsKeeper.Section junctionAnalysisSection = new StatsKeeper.Section("Junction analysis");
        long numReadsWithJunctions = th.getNumReadsWithJunctions();
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