List of estimateIntermediateScores() Examples

        if (processingPreferences.isScoringNeeded(usedAlgorithms)) {


            PsmScorer psmScorer = new PsmScorer();


            waitingHandler.appendReport("Estimating PSM scores.", true, true);
            psmScorer.estimateIntermediateScores(identification, inputMap, processingPreferences, annotationPreferences, searchParameters, sequenceMatchingPreferences, waitingHandler);


            if (processingPreferences.isTargetDecoyNeededForPsmScoring(usedAlgorithms)) {
                if (sequenceFactory.concatenatedTargetDecoy()) {
                    waitingHandler.appendReport("Estimating intermediate scores probabilities.", true, true);
                    psmScorer.estimateIntermediateScoreProbabilities(identification, inputMap, processingPreferences, waitingHandler);

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Examples of estimateIntermediateScores()

Examples of eu.isas.peptideshaker.scoring.psm_scoring.PsmScorer.estimateIntermediateScores()