List of estimateAACoverage() Examples

Examples of estimateAACoverage()

eu.isas.peptideshaker.utils.IdentificationFeaturesGenerator.estimateAACoverage()

Returns amino acid coverage of this protein by enzymatic or non-enzymatic peptides only in an array where the index of the best validation level of every peptide covering a given amino acid is given. 0 is the first amino acid. @param proteinMatchKey the key of the protein match @param enzymatic if not all peptides are considered, if true onlyenzymatic peptides will be considered, if false only non enzymatic @return the identification coverage of the protein sequence @throws IllegalArgumentException @throws SQLException @throws IOException @throws ClassNotFoundException @throws InterruptedException


            int[] validationCoverage;
            if (coverageShowAllPeptidesJRadioButtonMenuItem.isSelected()) {
                validationCoverage = identificationFeaturesGenerator.getAACoverage(proteinKey);
            } else {
                validationCoverage = identificationFeaturesGenerator.estimateAACoverage(proteinKey, coverageShowEnzymaticPeptidesOnlyJRadioButtonMenuItem.isSelected());
            }


            double minHeight = 0.2, maxHeight = 1;
            NonSymmetricalNormalDistribution peptideLengthDistribution = peptideShakerGUI.getMetrics().getPeptideLengthDistribution();
            if (peptideLengthDistribution != null) {

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Examples of estimateAACoverage()

Examples of eu.isas.peptideshaker.utils.IdentificationFeaturesGenerator.estimateAACoverage()