Examples of edu.stanford.nlp.util.Timing.stop()

edu.stanford.nlp.util.Timing.stop()
Stop timer. @return Number of milliseconds elapsed

    List<DependencyTree> predicted = testSents.stream().map(this::predictInner).collect(toList());
    Map<String, Double> result = system.evaluate(testSents, predicted, testTrees);
    double lasNoPunc = result.get("LASwoPunc");
    System.err.printf("UAS = %.4f%n", result.get("UASwoPunc"));
    System.err.printf("LAS = %.4f%n", lasNoPunc);
    long millis = timer.stop();
    double wordspersec = numWords / (((double) millis) / 1000);
    double sentspersec = numSentences / (((double) millis) / 1000);
    System.err.printf("%s tagged %d words in %d sentences in %.1fs at %.1f w/s, %.1f sent/s.%n",
            StringUtils.getShortClassName(this), numWords, numSentences, millis / 1000.0, wordspersec, sentspersec);

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    for (List<HasWord> sentence : preprocessor) {
      tagged.add(tagger.tagSentence(sentence));
    }


    System.err.printf("Tagging completed in %.2f sec.%n",
        timer.stop() / 1000.0);


    timer.start();


    int numSentences = 0;
    for (List<TaggedWord> taggedSentence : tagged) {

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      output.println();


      numSentences++;
    }


    long millis = timer.stop();
    double seconds = millis / 1000.0;
    System.err.printf("Parsed %d sentences in %.2f seconds (%.2f sents/sec).%n",
        numSentences, seconds, numSentences / seconds);
  }

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    try {
      MaxentTagger tagger = new MaxentTagger(config.getModel(), config);


      Timing t = new Timing();
      TestClassifier testClassifier = new TestClassifier(tagger);
      long millis = t.stop();
      printErrWordsPerSec(millis, testClassifier.getNumWords());
      testClassifier.printModelAndAccuracy(tagger);
    } catch (Exception e) {
      System.err.println("An error occurred while testing the tagger.");
      e.printStackTrace();

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    @Override
    public void run() {
      Timing t = new Timing();
      resultsString = runClassifier(crf, filename);
      long millis = t.stop();
      System.out.println("Thread " + threadName + " took " + millis + 
                         "ms to tag file " + filename);
    }        
  }

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    @Override
    public void run() {
      try {
        Timing t = new Timing();
        TestClassifier testClassifier = new TestClassifier(tagger);
        long millis = t.stop();
        resultsString = testClassifier.resultsString(tagger);
        System.out.println("Thread " + threadName + " took " + millis +
                           " milliseconds to tag " + testClassifier.getNumWords() +
                           " words.\n" + resultsString);
      } catch(IOException e) {

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      if (op.testOptions.writeOutputFiles) pwo.close();


      pwErr.println("Parsed file: " + filename + " [" + num + " sentences].");
    }


    long millis = timer.stop();


    if (summary) {
      if (pcfgLL != null) pcfgLL.display(false, pwErr);
      if (depLL != null) depLL.display(false, pwErr);
      if (factLL != null) factLL.display(false, pwErr);

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      assertEquals("atropine we need to have many many words here but we do n't sweating", m.group(0));


      match = m.find();
      assertFalse(match);
    }
    timing.stop("testTokenSequenceOptimizeOrString matched");




    CoreMap docNoMatch = createDocument("atropine we need to have many many words here but we don't, many many many words but still no match");
    timing.start();
    for (int i = 0; i < 100; i++) {

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    for (int i = 0; i < 100; i++) {
      TokenSequenceMatcher m = p.getMatcher(docNoMatch.get(CoreAnnotations.TokensAnnotation.class));
      boolean match = m.find();
      assertFalse(match);
    }
    timing.stop("testTokenSequenceOptimizeOrString no match");
  }


  public void testMultiplePatterns() throws IOException {
    TokenSequencePattern p1 = TokenSequencePattern.compile("(?$dt \"atropine\") []{0,15} " +
        "(?$se  \"social\" \"avoidant\" \"behaviour\"|\"dysuria\"|\"hyperglycaemia\"| \"mental\" \"disorder\"|\"vertigo\"|\"flutter\"| \"chest\" \"pain\"| \"elevated\" \"blood\" \"pressure\"|\"mania\"| \"rash\" \"erythematous\"|\"manic\"| \"papular\" \"rash\"|\"death\"| \"atrial\" \"arrhythmia\"| \"dry\" \"eyes\"| \"loss\" \"of\" \"libido\"| \"rash\" \"papular\"|\"hypersensitivity\"| \"blood\" \"pressure\" \"increased\"|\"dyspepsia\"| \"accommodation\" \"disorder\"| \"reflexes\" \"increased\"|\"lesions\"|\"asthenia\"| \"gastrointestinal\" \"pain\"|\"excitement\"| \"breast\" \"feeding\"|\"hypokalaemia\"| \"cerebellar\" \"syndrome\"|\"nervousness\"| \"pulmonary\" \"oedema\"| \"inspiratory\" \"stridor\"| \"taste\" \"altered\"|\"paranoia\"| \"psychotic\" \"disorder\"| \"open\" \"angle\" \"glaucoma\"|\"photophobia\"| \"dry\" \"eye\"|\"osteoarthritis\"| \"keratoconjunctivitis\" \"sicca\"| \"haemoglobin\" \"increased\"| \"ventricular\" \"extrasystoles\"|\"hallucinations\"|\"conjunctivitis\"|\"paralysis\"| \"qrs\" \"complex\"|\"anxiety\"| \"conjunctival\" \"disorder\"|\"coma\"|\"strabismus\"|\"thirst\"|\"para\"| \"sicca\" \"syndrome\"| \"atrioventricular\" \"dissociation\"|\"desquamation\"|\"crusting\"| \"abdominal\" \"distension\"|\"blindness\"|\"hypotension\"|\"dermatitis\"| \"sinus\" \"tachycardia\"| \"abdominal\" \"distention\"| \"lacrimation\" \"decreased\"|\"sicca\"| \"paralytic\" \"ileus\"| \"urinary\" \"hesitation\"|\"withdrawn\"| \"erectile\" \"dysfunction\"|\"keratoconjunctivitis\"|\"anaphylaxis\"| \"psychiatric\" \"disorders\"| \"altered\" \"taste\"|\"somnolence\"|\"extrasystoles\"|\"ageusia\"| \"intraocular\" \"pressure\" \"increased\"| \"left\" \"ventricular\" \"failure\"|\"impotence\"|\"drowsiness\"|\"conjunctiva\"| \"delayed\" \"gastric\" \"emptying\"| \"gastrointestinal\" \"sounds\" \"abnormal\"| \"qt\" \"prolonged\"| \"supraventricular\" \"tachycardia\"|\"weakness\"|\"hypertonia\"| \"confusional\" \"state\"|\"anhidrosis\"|\"myopia\"|\"dyspnoea\"| \"speech\" \"impairment\" \"nos\"| \"rash\" \"maculo\" \"papular\"|\"petechiae\"|\"tachypnea\"| \"acute\" \"angle\" \"closure\" \"glaucoma\"| \"gastrooesophageal\" \"reflux\" \"disease\"|\"hypokalemia\"| \"left\" \"heart\" \"failure\"| \"myocardial\" \"infarction\"| \"site\" \"reaction\"| \"ventricular\" \"fibrillation\"|\"fibrillation\"| \"maculopapular\" \"rash\"| \"impaired\" \"gastric\" \"emptying\"|\"amnesia\"| \"labored\" \"respirations\"| \"decreased\" \"lacrimation\"|\"mydriasis\"|\"headache\"| \"dry\" \"mouth\"|\"scab\"| \"cardiac\" \"syncope\"| \"visual\" \"acuity\" \"reduced\"|\"tension\"| \"blurred\" \"vision\"| \"bloated\" \"feeling\"| \"labored\" \"breathing\"| \"stridor\" \"inspiratory\"| \"skin\" \"exfoliation\"| \"memory\" \"loss\"|\"syncope\"| \"rash\" \"scarlatiniform\"|\"hyperpyrexia\"| \"cardiac\" \"flutter\"|\"heartburn\"| \"bowel\" \"sounds\" \"decreased\"|\"blepharitis\"|\"tachycardia\"| \"excessive\" \"thirst\"|\"confusion\"| \"rash\" \"macular\"| \"taste\" \"loss\"| \"respiratory\" \"failure\"|\"hesitancy\"|\"dysmetria\"|\"disorientation\"| \"decreased\" \"hemoglobin\"| \"atrial\" \"fibrillation\"| \"urinary\" \"retention\"| \"dry\" \"skin\"|\"dehydration\"|\"hyponatraemia\"|\"dysgeusia\"|\"disorder\"| \"increased\" \"intraocular\" \"pressure\"| \"speech\" \"disorder\"| \"feeling\" \"abnormal\"|\"pain\"| \"anaphylactic\" \"shock\"|\"hallucination\"| \"abdominal\" \"pain\"| \"junctional\" \"tachycardia\"| \"bun\" \"increased\"| \"ventricular\" \"flutter\"| \"scarlatiniform\" \"rash\"|\"agitation\"| \"feeling\" \"hot\"|\"hyponatremia\"| \"decreased\" \"bowel\" \"sounds\"|\"cyanosis\"|\"dysarthria\"| \"heat\" \"intolerance\"|\"hyperglycemia\"|\"reflux\"| \"angle\" \"closure\" \"glaucoma\"| \"electrocardiogram\" \"qt\" \"prolonged\"| \"vision\" \"blurred\"| \"blood\" \"urea\" \"increased\"|\"dizziness\"|\"arrhythmia\"|\"erythema\"|\"vomiting\"| \"difficulty\" \"in\" \"micturition\"|\"infarction\"|\"laryngospasm\"|\"hypoglycaemia\"|\"hypoglycemia\"| \"elevated\" \"hemoglobin\"| \"skin\" \"warm\"| \"ventricular\" \"arrhythmia\"|\"dissociation\"| \"warm\" \"skin\"| \"follicular\" \"conjunctivitis\"|\"urticaria\"|\"fatigue\"| \"cardiac\" \"fibrillation\"| \"decreased\" \"sweating\"| \"decreased\" \"visual\" \"acuity\"|\"lethargy\"| \"acute\" \"angle\" \"closure\" \"glaucoma\"| \"nodal\" \"rhythm\"|\"borborygmi\"|\"hyperreflexia\"| \"respiratory\" \"depression\"|\"diarrhea\"|\"leukocytosis\"| \"speech\" \"disturbance\"|\"ataxia\"|\"cycloplegia\"|\"tachypnoea\"|\"eczema\"| \"supraventricular\" \"extrasystoles\"|\"ileus\"| \"cardiac\" \"arrest\"| \"ventricular\" \"tachycardia\"|\"laryngitis\"|\"delirium\"|\"lactation\"|\"glaucoma\"|\"obstruction\"|\"hypohidrosis\"|\"parity\"|\"palpitations\"| \"temperature\" \"intolerance\"|\"constipation\"|\"cyclophoria\"| \"acute\" \"coronary\" \"syndrome\"| \"arrhythmia\" \"supraventricular\"|\"arrest\"|\"lesion\"|\"nausea\"| \"sweating\" \"decreased\"|\"keratitis\"|\"dyskinesia\"| \"pulmonary\" \"function\" \"test\" \"decreased\"|\"stridor\"|\"swelling\"|\"dysphagia\"| \"haemoglobin\" \"decreased\"|\"diarrhoea\"| \"ileus\" \"paralytic\"|\"clonus\"|\"insomnia\"| \"electrocardiogram\" \"qrs\" \"complex\"| \"nasal\" \"congestion\"| \"nasal\" \"dryness\"|\"sweating\"|\"rash\"| \"nodal\" \"arrhythmia\"|\"irritability\"|\"hyperhidrosis\"| \"ventricular\" \"failure\")");

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        Timing t = new Timing();
        tagAndOutputSentence(sentence, outputLemmas, morpha, outputStyle,
                             outputVerbosity, numSentences, "", writer);


        totalMillis += t.stop();
        writer.newLine();
        writer.flush();
        numSentences++;
      }
    }

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