Package edu.cornell.med.icb.goby.alignments

Examples of edu.cornell.med.icb.goby.alignments.AlignmentReader.skipTo()


    // Test below is disabled, it depends on a resource we don't control
    @Ignore
    public void testOldGobyHybridUrl() throws IOException {
        AlignmentReader reader = new AlignmentReaderImpl("http://gobyweb.apps.campagnelab.org/data/H_T_D/MYHZZJH/MYHZZJH-hybrid-domain.header");
        reader.reposition(10, 1210);
        final Alignments.AlignmentEntry entry = reader.skipTo(10, 1210);
        org.junit.Assert.assertNotNull(entry);
    }

    private String basesToText(byte[] bases) {
        StringBuffer sb = new StringBuffer();
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