Package edu.cornell.med.icb.goby.alignments

Examples of edu.cornell.med.icb.goby.alignments.AlignmentReader

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    }

    @Test
    public void testOldGobyHybrid() throws IOException {
        AlignmentReader reader = new AlignmentReaderImpl(TestUtils.DATA_DIR + "goby/GDFQPGI-pickrellNA18486_yale-hybrid.entries");
        org.junit.Assert.assertTrue(reader.hasNext());
    }
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    }

    // Test below is disabled, it depends on a resource we don't control
    @Ignore
    public void testOldGobyHybridUrl() throws IOException {
        AlignmentReader reader = new AlignmentReaderImpl("http://gobyweb.apps.campagnelab.org/data/H_T_D/MYHZZJH/MYHZZJH-hybrid-domain.header");
        reader.reposition(10, 1210);
        final Alignments.AlignmentEntry entry = reader.skipTo(10, 1210);
        org.junit.Assert.assertNotNull(entry);
    }
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Related Classes of edu.cornell.med.icb.goby.alignments.AlignmentReader

  • org.broad.igv.goby.GobyAlignmentQueryReaderTest
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