Examples of doConfirmUpdate()

Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doConfirmUpdate()

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   * This will complete any reciprocal messages for other affected
   * probes.*/
  public void confirmUpdate(Probe p, TagAllocator pd, DefiniteSequenceDB<Probe> probeset) {
    for (Iterator<CandidateAnalysisModule> i = armModules.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage1.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
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Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doConfirmUpdate()

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      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage1.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage2.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
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Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doConfirmUpdate()

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      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage2.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
    }
  }

  /**Check the DefaultTSSPair to see if they give rise to problems, that way we dont have
   * to check all variants if the DefaultTSSPair is the cause of problems.*/
 
View Full Code Here

Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doConfirmUpdate()

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   * This will complete any reciprocal messages for other affected
   * probes.*/
  public void confirmUpdate(Probe p, TagAllocator pd, DefiniteSequenceDB<Probe> probeset) {
    for (Iterator<CandidateAnalysisModule> i = armModules.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage1.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
View Full Code Here

Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doConfirmUpdate()

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      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage1.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage2.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
View Full Code Here

Examples of org.moltools.apps.probemaker.modules.ProbeAnalysisModule.doConfirmUpdate()

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      m.doConfirmUpdate(p, pd, probeset);
    }

    for (Iterator<CandidateAnalysisModule> i = candidateModulesStage2.iterator(); i.hasNext(); ) {
      ProbeAnalysisModule m = (ProbeAnalysisModule) i.next();
      m.doConfirmUpdate(p, pd, probeset);
    }
  }

  /**Check the DefaultTSSPair to see if they give rise to problems, that way we dont have
   * to check all variants if the DefaultTSSPair is the cause of problems.*/
 
View Full Code Here
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