}
logger.debug(String.format("Processing file (%d of %d) %s...", readerNumber++, totalNumberOfFiles, readerID.samFile));
readers.put(init.readerID,init.reader);
if ( ++nExecutedTotal % tickSize == 0) {
double tickInSec = (timer.currentTime() - lastTick) / 1000.0;
printReaderPerformance(nExecutedTotal, tickSize, totalNumberOfFiles, timer, tickInSec);
lastTick = timer.currentTime();
}
}