Examples of asSequence()

Examples of com.compomics.util.experiment.biology.AminoAcidPattern.asSequence()

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        for (TagComponent tagComponent : tag.getContent()) {
            if (tagComponent instanceof AminoAcidPattern) {
                AminoAcidPattern aminoAcidPattern = (AminoAcidPattern) tagComponent;
                for (int site = 1; site <= aminoAcidPattern.length(); site++) {
                    for (ModificationMatch modificationMatch : aminoAcidPattern.getModificationsAt(site)) {
                        String affectedResidue = aminoAcidPattern.asSequence(site - 1);
                        String modName = modificationMatch.getTheoreticPtm();
                        Color ptmColor = modificationProfile.getColor(modName);
                        if (modificationMatch.isConfident()) {
                            tooltip += "<span style=\"color:#" + Util.color2Hex(Color.WHITE) + ";background:#" + Util.color2Hex(ptmColor) + "\">"
                                    + affectedResidue
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