Examples of asMgf()

Examples of com.compomics.util.experiment.massspectrometry.MSnSpectrum.asMgf()

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        String spectrumAsMgf = "";
        try {
            for (String spectrumKey : getSelectedPsm()) {
                MSnSpectrum currentSpectrum = peptideShakerGUI.getSpectrum(spectrumKey);
                spectrumAsMgf += currentSpectrum.asMgf() + System.getProperty("line.separator");
            }
            if (!spectrumAsMgf.isEmpty()) {
                return spectrumAsMgf;
            }
        } catch (Exception e) {
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Examples of com.compomics.util.experiment.massspectrometry.MSnSpectrum.asMgf()

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        if (spectrumTable.getSelectedRow() != -1) {
            String spectrumKey = getSelectedSpectrumKey();
            MSnSpectrum currentSpectrum = peptideShakerGUI.getSpectrum(spectrumKey);

            if (currentSpectrum != null) {
                return currentSpectrum.asMgf();
            }
        }

        return null;
    }
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Examples of com.compomics.util.experiment.massspectrometry.MSnSpectrum.asMgf()

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            SelfUpdatingTableModel tableModel = (SelfUpdatingTableModel) psmTable.getModel();
            for (int row : selectedRows) {
                int psmIndex = tableModel.getViewIndex(row);
                String spectrumKey = psmKeys.get(psmIndex);
                MSnSpectrum currentSpectrum = peptideShakerGUI.getSpectrum(spectrumKey);
                spectraAsMgf.append(currentSpectrum.asMgf());
            }

            return spectraAsMgf.toString();
        }
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