Examples of VennFilteredDataModel

bnGUI.venn.db.VennFilteredDataModel
Represents a subset of a group/element set. The group and element IDs are remapped to be in a continous range 0...(n-1). @author muellera

Examples of bnGUI.venn.db.VennFilteredDataModel


        }


        checkModelAndFilterCompatibility(model, filter);
        
        venn.setDataModel(filter == null ? model : new VennFilteredDataModel(model, filter));


        vennArrsOptim.clearObservers();
        
        if( simFile.value != null )
        {

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Examples of bnGUI.venn.db.VennFilteredDataModel

          


        filterToUse = (GODistanceFilter)dataModel.getFilter().clone();
          filterToUse.setUser(null);
          origDataModel.setSucc(null);
          modelToUse = new VennFilteredDataModel((IVennDataModel) SystemUtility.serialClone(origDataModel), filterToUse);
          resetButton.setEnabled(false);
          fireActionPerformed( new ActionEvent(this,0,"update") );
          return;
        }

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Examples of bnGUI.venn.db.VennFilteredDataModel

          makeComboBox(false, false, true, true, true, true, true, true);
        } else {
          throw new IllegalArgumentException();
        }


        dataModel = new VennFilteredDataModel(sourceDataModel, filter0);
//        dataModel.addChangeListener( this );
        dataModel.setSucc(this);
        dataModel.notifySucc();
        
      // set maxPFDR spinner data

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Examples of bnGUI.venn.db.VennFilteredDataModel

    // updates the Venn diagram
        //venn.setDataModel( filteredDataModel.createCopy() );


    vennArrsOptim.stopForRestart(); // stop if running


    final VennFilteredDataModel filteredDataModel = filterPanel.getFilteredDataModel();
    venn.setDataModel( filteredDataModel );
    catTable.setDataModel(filteredDataModel); // for table header (p/fdr)
    
    vennArrsOptim.restart();

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Examples of bnGUI.venn.db.VennFilteredDataModel

        });
        dataSplitter.setSuccFinal();
        
        manualFilter = new ManualFilter();


        filteredModel = new VennFilteredDataModel();
        
    params = new AllParameters();
    
    setLayout(null);

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Examples of bnGUI.venn.db.VennFilteredDataModel

   */
  public void restoreLabels() {
    if (labels != null) {
      VennFilteredDataModel[] models = dataSplitter.getModels();
      for (int i = 0; i < models.length; i++) {
        VennFilteredDataModel model = models[i];


        final BitSet groups = model.getGroups();
        final BitSet ggroups = filteredModel.localToGlobalGroupID(groups);


        //search label
        for (int k = 0; k < labels.size(); k++) {
          DragLabel label = labels.get(k);
          if (label == null) continue;


          BitSet ggroupsAndLabelPath = (BitSet) ggroups.clone();
          ggroupsAndLabelPath.and(label.getPath());
          if (label.getPath().cardinality() == ggroupsAndLabelPath.cardinality()) {
            //label found for this model (label path has no groups which don't exist in model)
            
            BitSet glabelPath = filteredModel.globalToLocalGroupID(label.getPath());
            label.setPath(model.globalToLocalGroupID(glabelPath));


            ((VennDiagramView) views[i]).add(label);
            labels.set(k, null);
          }
        }

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Examples of bnGUI.venn.db.VennFilteredDataModel


  private void restoreManuallySetColors() {
    if (pathColors != null) {
      VennFilteredDataModel[] models = dataSplitter.getModels();
      for (int i = 0; i < models.length; i++) {
        VennFilteredDataModel model = models[i];


        final BitSet groups = model.getGroups();
        final BitSet ggroups = filteredModel.localToGlobalGroupID(groups);


        Map<BitSet, Color> pathColorsForModel = new HashMap<BitSet, Color>();
        //search color
        for (Map.Entry<BitSet, Color> entr : pathColors.entrySet()) {
          BitSet path = entr.getKey();
          Color color = entr.getValue();


          BitSet ggroupsAndColorPath = (BitSet) ggroups.clone();
          ggroupsAndColorPath.and(path);
          if (path.cardinality() == ggroupsAndColorPath.cardinality()) {
            //color found for this model (color path has no groups which don't exist in model)
            
            assert color != null;
            BitSet gcolorPath = filteredModel.globalToLocalGroupID(path);
            pathColorsForModel.put(model.globalToLocalGroupID(gcolorPath), color);
            entr.setValue(null);
          }
        }
        ((VennDiagramView) views[i]).setColors(pathColorsForModel);
      }

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Examples of bnGUI.venn.db.VennFilteredDataModel

        vennArrsOptim.setParameters(params);
        venn = new VennPanel(vennArrsOptim);
    venn.setDataModel(loadFiles.getSourceDataModel());
    
    model = loadFiles.getSourceDataModel(); 
        venn.setDataModel(filter == null ? model : new VennFilteredDataModel(model, filter));
  }

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