Examples of UserParameter

at.riemers.zero.base.model.UserParameter
@author tobias
net.sf.mzmine.parameters.UserParameter
Parameter interface, represents parameters or variables used in the project

Examples of at.riemers.zero.base.model.UserParameter

                    u.setPassword(userForm.getPassword());
                }
            }


            for (String key : userForm.getValues().keySet()) {
                UserParameter parameter = u.getParameters().get(key);
                if (parameter != null) {
                    parameter.setValue(userForm.getValues().get(key));
                }
            }


            userDao.makePersistent(u);
        }

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Examples of at.riemers.zero.base.model.UserParameter

        for (Module module : moduleController.getModules()) {
            for (UserParameterTemplate template : module.getUserParameters(user).values()) {
                if (template.isEditableByUser() || !onlyUserEditable) {
                    JSONObject jparameter = new JSONObject();
                    jparameters.element(jparameter);
                    UserParameter parameter = user.getParameter(template.getKey(), template.getRole());
                    jparameter.element("key", parameter.getKey());
                    if (template.getRole() != null) {
                        jparameter.element("keyName", template.getRole().getName() + " - " + parameter.getName());
                    } else {
                        jparameter.element("keyName", parameter.getName());
                    }
                    String value = template.formatValue(parameter);
                    jparameter.element("value", value);
                    jparameter.element("editor", "v2js_" + template.getEditorTemplate());
                }

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Examples of at.riemers.zero.base.model.UserParameter

                }


                boolean error = false;
                for (String key : userForm.getValues().keySet()) {
                    log.debug("2 - form: " + key);
                    UserParameter parameter = selectedUser2.getParameters().get(key);
                    if (parameter != null) {
                        log.debug("3 - found");
                        /*PermissionTemplate permissionTemplate = getModuleController().getPermissionTemplate(permissionKey);
                        if (permissionTemplate != null) {
                        String value = roleForm.getValues().get(permissionKey);
                        if (permissionTemplate.checkValue(value)) {
                        permission.setValue(value);
                        } else {
                        if (permissionTemplate.getValueRangeMessage() != null) {
                        view.setMessage(permissionTemplate.getValueRangeMessage());
                        error = true;
                        }
                        }
                        }*/
                        parameter.setValue(userForm.getValues().get(key));
                    }
                }


                log.debug(selectedUser2.getUserGroup().getId() + " " + selectedUser2.getUserGroup().getGroupKey());
                try {

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Examples of at.riemers.zero.base.model.UserParameter

        List<UserParameter> list = new ArrayList(user.getParameters().values());
        Map<String, UserParameter> map = new HashMap();


        for (Module module : getModuleManager().getModules()) {
            for (UserParameterTemplate ut : module.getUserParameters(user).values()) {
                UserParameter parameter = ut.createUserParameter();
                log.debug(parameter.getKey());
                map.put(parameter.getKey(), parameter);
            }
        }


        log.debug("module parameter count: " + map.size());
        log.debug("current user parameter count: " + list.size());
        // delete unused parameters from user
        for (UserParameter parameter : list) {


            UserParameter p = map.get(parameter.getKey());
            if (p == null) {
                log.debug("remove parameter from user: " + parameter.getKey());
                user.getParameters().remove(parameter.getKey());
            } else {
                map.remove(parameter.getKey());

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Examples of net.sf.mzmine.parameters.UserParameter


    }


    if (src == buttonRemoveParameter) {
      int selectedColumn = tableParameterValues.getSelectedColumn();
      UserParameter parameter = tablemodelParameterValues
          .getParameter(selectedColumn);
      if (parameter == null) {
        desktop.displayErrorMessage("Select a parameter column from the table first.");
        return;
      }

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Examples of net.sf.mzmine.parameters.UserParameter

  protected UserParameter getParameter(String parameterName) {
    Iterator<UserParameter> parameterIterator = parameterValues.keySet()
        .iterator();


    while (parameterIterator.hasNext()) {
      UserParameter p = parameterIterator.next();
      if (p.getName().equals(parameterName))
        return p;
    }


    return null;
  }

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Examples of net.sf.mzmine.parameters.UserParameter

  }


  private boolean validateParameterValues() {
    // Create new parameters and set values
    for (int columnIndex = 0; columnIndex < parameterValues.keySet().size(); columnIndex++) {
      UserParameter parameter = tablemodelParameterValues
          .getParameter(columnIndex + 1);


      if (parameter instanceof DoubleParameter) {


        for (int dataFileIndex = 0; dataFileIndex < dataFiles.length; dataFileIndex++) {
          Object objValue = tablemodelParameterValues.getValueAt(
              dataFileIndex, columnIndex + 1);
          if (objValue instanceof String) {
            try {
              Double.parseDouble((String) objValue);
            } catch (NumberFormatException ex) {
              desktop.displayErrorMessage("Incorrect value ("
                  + objValue + ") for parameter "
                  + parameter.getName() + " in data file "
                  + dataFiles[dataFileIndex].getName() + ".");
              return false;
            }
          }
        }

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Examples of net.sf.mzmine.parameters.UserParameter

      currentProject.addParameter(parameter);
    }


    // Set values for new parameters
    for (int columnIndex = 0; columnIndex < parameterValues.keySet().size(); columnIndex++) {
      UserParameter parameter = tablemodelParameterValues
          .getParameter(columnIndex + 1);


      for (int dataFileIndex = 0; dataFileIndex < dataFiles.length; dataFileIndex++) {
        RawDataFile file = dataFiles[dataFileIndex];

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Examples of net.sf.mzmine.parameters.UserParameter

        parameterValues);
    tableParameterValues.setModel(tablemodelParameterValues);


    for (int columnIndex = 0; columnIndex < (tablemodelParameterValues
        .getColumnCount() - 1); columnIndex++) {
      UserParameter parameter = tablemodelParameterValues
          .getParameter(columnIndex + 1);
      if (parameter instanceof ComboParameter) {
        Object choices[] = ((ComboParameter<Object>) parameter)
            .getChoices();
        tableParameterValues

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Examples of net.sf.mzmine.parameters.UserParameter


  public String getColumnName(int col) {
    if (col == 0)
      return "Raw data";
    if (col > 0) {
      UserParameter p = parameters[col - 1];
      return p.getName();
    }
    return null;
  }

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