Examples of ucar.nc2.dt.fmrc.FmrcDefinition$Grid

ucar.nc2.NetcdfFile

Defines the expected inventory of a Forecast Model Run Collection.

 Data Structures  List VertTimeCoord double[] values 
 List TimeCoord double[] offsetHour 
 List RunSeq List Run - runHour dependent TimeCoord double hour TimeCoord 
 List Grid String name VertTimeCoord - time dependent vertical coordinate VertCoord TimeCoord (optional) 
 
 Abstractly, the data is a table: Run  Grid  TimeCoord  VertCoord Run  Grid  TimeCoord  VertCoord Run  Grid  TimeCoord  VertCoord ... 
 We will use the notation ({} means list) {Run, Grid, TimeCoord, VertCoord} 
 The simplest case would be if all runs have the same grids, which all use the same time coord, and each grid always uses the same vert coord : (1) {runTime} X {Grid, VertCoord} X TimeCoord      (X means product) 
 The usual case is that there are multiple TimeCoords, but a grid always uses the same one: (2) {runTime} X {Grid, VertCoord, TimeCoord} 
 Since all runTimes are the same, the definition only need be: (2d) {Grid, VertCoord, TimeCoord} 
 Another case is that different run hours use different TimeCoords. We will call this a RunSeq, and we associate with each RunSeq the list of grids that use it: Run = runHour, TimeCoord RunSeq = {runHour, TimeCoord} X {Grid, VertCoord} 
 Different grids use different RunSeqs, so we have a list of RunSeq: (3d) {{runHour, TimeCoord} X {Grid, VertCoord}} 
 We can recast (2d), when all runHours are the same,  as: (2d') {TimeCoord X {Grid, VertCoord}} which means that we are grouping grids by unique TimeCoord. (1d) would be the case where there is only one in the list. 
 Another case is when the VertCoord depends on the TimeCoord, but all run hours are the same: (4d) {TimeCoord X {Grid, VertCoord(TimeCoord)}} 
 Which lead us to generalize a VertCoord to a time-dependent one, called VertTimeCoord. 
 The most general case is then {{runHour, TimeCoord} X {Grid, VertTimeCoord}}

@author caron

        int                        numZ  = 0;
        HashMap<String, Dimension> zDims = new HashMap<String, Dimension>();
        for (GradsDimension dim : dims) {
            String    name  = getVarName(dim);
            int       size  = dim.getSize();
            Dimension ncDim = new Dimension(name, size, true);
            ncFile.addDimension(null, ncDim);
            if (name.equals(ENS_VAR)) {
                v = new Variable(ncFile, null, null, name, DataType.STRING,
                                 name);
                v.addAttribute(new Attribute("standard_name", "ensemble"));
                v.addAttribute(new Attribute(_Coordinate.AxisType,
                                             AxisType.Ensemble.toString()));
                List<String> names =
                    gradsDDF.getEnsembleDimension().getEnsembleNames();
                String[] nameArray = new String[names.size()];
                for (int i = 0; i < nameArray.length; i++) {
                    nameArray[i] = names.get(i);
                }
                Array dataArray = Array.factory(DataType.STRING,
                                      new int[] { nameArray.length },
                                      nameArray);
                v.setCachedData(dataArray, false);
            } else {
                double[] vals = dim.getValues();
                v = new Variable(ncFile, null, null, name, DataType.DOUBLE,
                                 name);
                v.addAttribute(new Attribute("units", dim.getUnit()));
                if (name.equals(Y_VAR)) {
                    v.addAttribute(new Attribute("long_name", "latitude"));
                    v.addAttribute(new Attribute("standard_name",
                            "latitude"));
                    v.addAttribute(new Attribute("axis", "Y"));
                    sizeY = dim.getSize();
                    v.addAttribute(new Attribute(_Coordinate.AxisType,
                            AxisType.Lat.toString()));
                } else if (name.equals(X_VAR)) {
                    v.addAttribute(new Attribute("long_name", "longitude"));
                    v.addAttribute(new Attribute("standard_name",
                            "longitude"));
                    v.addAttribute(new Attribute("axis", "X"));
                    v.addAttribute(new Attribute(_Coordinate.AxisType,
                            AxisType.Lon.toString()));
                    sizeX = dim.getSize();
                } else if (name.equals(Z_VAR)) {
                    numZ = size;
                    zDims.put(name, ncDim);
                    v.addAttribute(new Attribute("long_name", "level"));
                    addZAttributes(dim, v);
                } else if (name.equals(TIME_VAR)) {
                    v.addAttribute(new Attribute("long_name", "time"));
                    v.addAttribute(new Attribute(_Coordinate.AxisType,
                            AxisType.Time.toString()));
                }
                ArrayDouble.D1 varArray = new ArrayDouble.D1(size);
                for (int i = 0; i < vals.length; i++) {
                    varArray.set(i, vals[i]);
                }
                v.setCachedData(varArray, false);
            }
            ncFile.addVariable(null, v);
        }
        if (numZ > 0) {
            GradsDimension zDim = gradsDDF.getZDimension();
            double[]       vals = zDim.getValues();
            for (GradsVariable var : vars) {
                int nl = var.getNumLevels();
                if ((nl > 0) && (nl != numZ)) {
                    String name = Z_VAR + nl;
                    if (zDims.get(name) == null) {
                        Dimension ncDim = new Dimension(name, nl, true);
                        ncFile.addDimension(null, ncDim);
                        Variable vz = new Variable(ncFile, null, null, name,
                                          DataType.DOUBLE, name);
                        vz.addAttribute(new Attribute("long_name", name));
                        vz.addAttribute(new Attribute("units",

View Full Code Here

        if (!(ncvar instanceof VariableDS)) continue; // cant be a structure


        String dimName = findAlias(ds, ncvar);
        if (dimName.length() == 0) // none
          continue;
        Dimension dim = ds.findDimension(dimName);
        if (null != dim) {
          vp.isCoordinateAxis = true;
          parseInfo.format(" Coordinate Axis added (alias) = %s for dimension %s\n", vp.v.getFullName(), dimName);
        }
      }

View Full Code Here

   * @param ncfile test this NetcdfFile
   * @return true if we think this is a ATDRadarConvention file.
   */
  public static boolean isMine(NetcdfFile ncfile) {
    // not really sure until we can examine more files
    Dimension s = ncfile.findDimension("cedric_general_scaling_factor");
    Variable v = ncfile.findVariable("cedric_run_date");
    if(v != null && s != null)
        return true;
    else
        return false;

View Full Code Here

    }


    Variable v = ds.findVariable("time_offset");
    v.addAttribute(new Attribute( "units", "seconds since "+dfo.toDateTimeString(start)));


    Group root = ds.getRootGroup();
    root.addAttribute(new Attribute( "Convention", "Suomi-Station-CDM"));    
    ds.finish();
  }

View Full Code Here

 }


  public void problemV() throws IOException {
    H5header.setDebugFlags(new ucar.nc2.util.DebugFlagsImpl("H5header/header"));
    String filename = testDir + "ssec-h5/MYD04_L2.A2006188.1830.005.2006194121515.hdf";
    NetcdfFile ncfile = NetcdfFile.open(filename);
    Variable v = ncfile.findVariable("/U-MARF/EPS/IASI_xxx_1C/DATA/SPECT_LAT_ARRAY");
    Array data = v.read();
    System.out.println("\n**** testReadNetcdf4 done\n\n" + ncfile);
    NCdump.printArray(data, "primary_cloud", System.out, null);
    ncfile.close();
  }

View Full Code Here

  }


  static public void readAllData( String filename) {
    System.out.println("\n------Reading filename "+filename);
    try {
      NetcdfFile ncfile = TestH5.open(filename);
      //System.out.println("\n"+ncfile);


      for (Variable v : ncfile.getVariables()) {
        if (v.getSize() > max_size) {
          Section s = makeSubset(v);
          System.out.println("  Try to read variable " + v.getNameAndDimensions() + " size= " + v.getSize() + " section= " + s);
          v.read(s);
        } else {
          System.out.println("  Try to read variable " + v.getNameAndDimensions() + " size= " + v.getSize());
          v.read();
        }
      }
      ncfile.close();
    } catch (Exception e) {
      e.printStackTrace();
      //assert false;
    }
  }

View Full Code Here

  public void testFilterNoneApplied() throws IOException {
    // H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));


    // actually bogus - apparently all filters arre turned off
    // but its a test of filtered data with no filter actually applied
    NetcdfFile ncfile = TestH5.openH5("support/zip.h5");
    Variable v = ncfile.findVariable("Data/Compressed_Data");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 1000;
    assert shape[1] == 20;

View Full Code Here


  public void test2() throws IOException {
    //H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));


    // probably bogus also, cant find any non-zero filtered variables
    NetcdfFile ncfile = TestH5.openH5("wrf/wrf_input_seq.h5");
    Variable v = ncfile.findVariable("DATASET=INPUT/GSW");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 1;
    assert shape[1] == 20;

View Full Code Here

    assert shape[2] == 10;
  }


  public void testDeflate() throws IOException {
    //H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));
    NetcdfFile ncfile = TestH5.openH5("msg/MSG1_8bit_HRV.H5");


    // picture looks ok in ToolsUI
    Variable v = ncfile.findVariable("image1/image_data");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 1000;
    assert shape[1] == 1500;

View Full Code Here

    assert shape[1] == 1500;
  }


  public void testMissing() throws IOException {
    //H5header.setDebugFlags( new ucar.nc2.util.DebugFlagsImpl("H5header/header"));
    NetcdfFile ncfile = TestH5.openH5("HIRDLS/HIRDLS2-AFGL_b027_na.he5");


    // picture looks ok in ToolsUI
    Variable v = ncfile.findVariable("HDFEOS/SWATHS/HIRDLS/Data Fields/Altitude");
    assert v != null;
    Array data = v.read();
    int[] shape = data.getShape();
    assert shape[0] == 6;
    assert shape[1] == 145;

View Full Code Here

0 1 2 3 4 5 6 7 8 9

TOP

Related Classes of ucar.nc2.dt.fmrc.FmrcDefinition$Grid

cnslab.cnsnetwork.PlotResult

cnslab.gui.ContentProcessResult

cnslab.gui.ContentProcessResult2

edu.wisc.ssec.mcidas.adde.AddePointDataReader

examples.Pres_temp_4D_rd

examples.Pres_temp_4D_wr

examples.Sfc_pres_temp_rd

examples.Sfc_pres_temp_wr

examples.Simple_xy_rd

examples.Simple_xy_wr

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.