Examples of Transcript

eu.mosaic_cloud.tools.transcript.core.Transcript
gov.nysenate.openleg.model.Transcript
@author GraylinKim
org.jivesoftware.smackx.workgroup.packet.Transcript
Represents the conversation transcript that occured in a group chat room between an Agent and a user that requested assistance. The transcript contains all the Messages that were sent to the room as well as the sent presences. @author Gaston Dombiak
picard.annotation.Gene.Transcript

Examples of gov.nysenate.openleg.model.Transcript

                resultNode.setAttribute("committee", meeting.getCommitteeName());
                resultNode.setAttribute("location", meeting.getLocation());
                resultNode.setAttribute("chair", meeting.getCommitteeChair());
            }
            else if (result.getOtype().equals("transcript")) {
                Transcript transcript = (Transcript)result.getObject();
                resultNode.setAttribute("location", transcript.getLocation());
            }
            else if (result.getOtype().equals("calendar")) {
                // no additional fields.
            }
            root.addContent(resultNode);

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Examples of org.jivesoftware.smackx.workgroup.packet.Transcript

     * @param workgroupJID the JID of the workgroup that will process the request.
     * @return the full conversation transcript of a given session.
     * @throws XMPPException if an error occurs while getting the information.
     */
    public Transcript getTranscript(String workgroupJID, String sessionID) throws XMPPException {
        Transcript request = new Transcript(sessionID);
        request.setTo(workgroupJID);
        PacketCollector collector = connection.createPacketCollector(new PacketIDFilter(request.getPacketID()));
        // Send the request
        connection.sendPacket(request);


        Transcript response = (Transcript) collector.nextResult(SmackConfiguration.getPacketReplyTimeout());


        // Cancel the collector.
        collector.cancel();
        if (response == null) {
            throw new XMPPException("No response from server on status set.");
        }
        if (response.getError() != null) {
            throw new XMPPException(response.getError());
        }
        return response;
    }

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Examples of org.jivesoftware.smackx.workgroup.packet.Transcript

     * @param workgroupJID the JID of the workgroup that will process the request.
     * @return the full conversation transcript of a given session.
     * @throws XMPPException if an error occurs while getting the information.
     */
    public Transcript getTranscript(String workgroupJID, String sessionID) throws XMPPException {
        Transcript request = new Transcript(sessionID);
        request.setTo(workgroupJID);
        PacketCollector collector = connection.createPacketCollector(new PacketIDFilter(request.getPacketID()));
        // Send the request
        connection.sendPacket(request);


        Transcript response = (Transcript) collector.nextResult(SmackConfiguration.getPacketReplyTimeout());


        // Cancel the collector.
        collector.cancel();
        if (response == null) {
            throw new XMPPException("No response from server on status set.");
        }
        if (response.getError() != null) {
            throw new XMPPException(response.getError());
        }
        return response;
    }

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Examples of picard.annotation.Gene.Transcript

                throw new AnnotationException("Chromosome disagreement(" + chromosome + " != " + row.getField(RefFlatColumns.CHROMOSOME.name()) +
                                                      ") in refFlat file for gene " + geneName);
            }


            // This adds it to the Gene also
            final Transcript tx = makeTranscriptFromRefFlatLine(gene, row);
        }


        return gene;
    }

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Examples of picard.annotation.Gene.Transcript

        final int transcriptionStart = row.getIntegerField(RefFlatColumns.TX_START.name()) + 1;
        final int transcriptionEnd = row.getIntegerField(RefFlatColumns.TX_END.name());
        final int codingStart = row.getIntegerField(RefFlatColumns.CDS_START.name()) + 1;
        final int codingEnd = row.getIntegerField(RefFlatColumns.CDS_END.name());


        final Transcript tx = gene.addTranscript(transcriptName, transcriptionStart, transcriptionEnd, codingStart, codingEnd, exonCount);


        for (int i = 0; i < exonCount; ++i) {
            final Exon e = tx.addExon(Integer.parseInt(exonStarts[i]) + 1, Integer.parseInt(exonEnds[i]));


            if (e.start >= e.end) {
                throw new AnnotationException("Exon has 0 or negative extent for " + transcriptDescription);
            }
            if (i > 0 && tx.exons[i-1].end >= tx.exons[i].start) {

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