Examples of TDFTile


Examples of org.broad.igv.tdf.TDFTile

        String dsName = "/chr1/raw";

        TDFDataset ds1 = TDFReader.getReader(file1).getDataset(dsName);
        TDFDataset ds2 = TDFReader.getReader(file2).getDataset(dsName);

        TDFTile t1 = ds1.getTiles(start, end).get(0);
        TDFTile t2 = ds2.getTiles(start, end).get(0);

        int nPts = t1.getSize();
        assertEquals(nPts, t2.getSize());

        for (int i = 0; i < nPts; i++) {
            assertTrue(t1.getStartPosition(i) < t1.getEndPosition(i));
            assertEquals(t1.getStartPosition(i), t2.getStartPosition(i));
            assertTrue(t1.getValue(0, i) <= t2.getValue(0, i));
            if (i < nPts - 1) {
                assertTrue(t1.getStartPosition(i) < t1.getStartPosition(i + 1));
            }
        }
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