Examples of TargettedSubSequence

Examples of org.moltools.design.data.TargettedSubSequence

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    int maxlength = Integer.parseInt(parameters.get(PROP_MAX_3_TSS_LENGTH));

    byte fixedEnd = target.getThreePrimeFixedEnd();

    //The template for this arm
    TargettedSubSequence temp;
    try {
      temp = (TargettedSubSequence) target.getTemplateCluster().getSequence(ProbeMakerTarget.KEY_THREE_PRIME);
    }
    catch (ClusterException e) {
      temp = null;
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Examples of org.moltools.design.data.TargettedSubSequence

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    int maxlength = Integer.parseInt(parameters.get(PROP_MAX_5_TSS_LENGTH));

    byte fixedEnd = target.getFivePrimeFixedEnd();

    //Get the upstream part of the target
    TargettedSubSequence temp;
    try {
      temp = (TargettedSubSequence) target.getTemplateCluster().getSequence(ProbeMakerTarget.KEY_FIVE_PRIME);
    }
    catch (ClusterException e) {
      temp = null;
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Examples of org.moltools.design.data.TargettedSubSequence

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        }
        catch (ClusterException e) {
          pa5 = null;
        }

        TargettedSubSequence fiveTemplate = null;
        try {
          fiveTemplate = (TargettedSubSequence) t.getTemplateCluster().getSequence(ProbeMakerTarget.KEY_FIVE_PRIME);
        }
        catch (ClusterException e) {
          ProbeMakerPropertyUtils.addMessage(p,new Message(
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