Package stallone.api.datasequence

Examples of stallone.api.datasequence.IDataSequence

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    }
   
    @Test
    public void compareWrittenWithPreviouslyRed() throws IOException {
        DcdReader reader = new DcdReader(output);
        IDataSequence outputSeq = reader.load();
        assertTrue("length of input and output", seq.size() == outputSeq.size());
       
        int size = seq.size();
        for(int i = 0; i < size; i++) {
            assertArrayEquals("trajectory with index " + i + " differs.",
                    seq.get(i).getArray(),
                    outputSeq.get(i).getArray(), 1E-6);
        }
    }
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    @Before
    public void setUp() throws IOException {
        String files = "/home/marscher/md_simulation_data/trajall_500K.xtc";
        IDataReader loader = API.dataNew.reader(files);
        IDataSequence data = loader.load();
       
        IMetric metric = API.clusterNew.metric(0, 0);
       
        this.algo = API.clusterNew.kmeans(data, metric, 10, 100);
    }
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Related Classes of stallone.api.datasequence.IDataSequence

  • stallone.api.cluster.TestKMeans
  • stallone.api.hmm.HMMFactory
  • stallone.cluster.CompactRandomClustering
  • stallone.coordinates.TICA
  • stallone.datasequence.DataInput_SingleSequenceIterator
  • stallone.datasequence.io.TestDCDReaderWriter
  • stallone.hmm.HMMForwardModel
  • stallone.hmm.pmm.MultiClustering
  • stallone.hmm.pmm.MultiClusteringSplitMerge
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