Package ru.autosome.commons.importer

Examples of ru.autosome.commons.importer.PWMImporter

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     "pvalue: " + info.pvalue + "\n" +
     "number of recognized words: " + info.numberOfRecognizedWords(background, pwmLength) + "\n------------\n");
  }

  public static void main(String[] args) {
    PWM pwm = new PWMImporter().loadMotif("test_data/pwm/KLF4_f2.pwm");
    BackgroundModel background = new WordwiseBackground();
    Discretizer discretizer = new Discretizer(10000.0);
    Integer max_hash_size = null;
    double threshold = 3;
    double[] thresholds = {3,5,7};
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                         "actual pvalue: " + info.real_pvalue + "\n" +
                         "number of recognized words: " + info.numberOfRecognizedWords(background, pwmLength) + "\n------------\n");
  }

  public static void main(String[] args) {
    PWM pwm = new PWMImporter().loadMotif("test_data/pwm/KLF4_f2.pwm");
    BackgroundModel background = new WordwiseBackground();
    Discretizer discretizer = new Discretizer(10000.0);
    BoundaryType pvalue_boundary = BoundaryType.LOWER;
    Integer max_hash_size = null;
    double pvalue = 0.0005;
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      e.printStackTrace();
    }
  }

  public static void main(String[] args) {
    PWM pwm = new PWMImporter().loadMotif("test_data/pwm/KLF4_f2.pwm");

    Discretizer discretizer = new Discretizer(10000.0);
    Integer max_hash_size = null;
    double threshold = 7;
//    double[] thresholds = {3,5,7};
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Related Classes of ru.autosome.commons.importer.PWMImporter

  • ru.autosome.ape.di.FindPvalue
  • ru.autosome.ape.di.FindThreshold
  • ru.autosome.ape.di.PrecalculateThresholdLists
  • ru.autosome.ape.example.FindPvalue
  • ru.autosome.ape.example.FindPvalueDinucleotide
  • ru.autosome.ape.example.FindThreshold
  • ru.autosome.ape.FindPvalue
  • ru.autosome.ape.FindThreshold
  • ru.autosome.ape.PrecalculateThresholdLists
  • ru.autosome.commons.motifModel.mono.PCM
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