private PeakList alignment;
private ParameterSet params;
public ScoreAligner(PeakList[] dataToAlign, ParameterSet params) {
this.params = params;
this.calc = new RTScore();
originalPeakList = java.util.Collections.unmodifiableList(Arrays
.asList(dataToAlign));
copyAndSort(Arrays.asList(dataToAlign));
}