Examples of RootedTree

org.phylowidget.tree.RootedTree

Examples of org.phylowidget.tree.RootedTree

    if (r != null && r != curNodeRange)
    {
      Tool t = EventManager.instance.getToolManager().getCurrentTool();
      if (t.respondToOtherEvents())
      {
        RootedTree tree = r.render.getTree();
        PhyloWidget.ui.updateNodeInfo(tree, r.node);
      }
    }
    /*
     * Logic for the glow resetting and whatnot.

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Examples of org.phylowidget.tree.RootedTree

    r.render.layoutTrigger();
  }


  public void nodeAddSister() {
    NodeRange r = curRange();
    RootedTree tree = r.render.getTree();
    PhyloNode sis = (PhyloNode) tree.createAndAddVertex("");
    tree.addSisterNode(curNode(), sis);
  }

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Examples of org.phylowidget.tree.RootedTree

    tree.addSisterNode(curNode(), sis);
  }


  public void nodeAddChild() {
    NodeRange r = curRange();
    RootedTree tree = r.render.getTree();
    tree.addChildNode(curNode());
  }

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Examples of org.phylowidget.tree.RootedTree

    clipboard.clearClipboard();
  }


  public void nodeDelete() {
    NodeRange r = curRange();
    RootedTree g = r.render.getTree();
    synchronized (g) {
      g.deleteNode(curNode());
    }
  }

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Examples of org.phylowidget.tree.RootedTree

    }
  }


  public void nodeDeleteSubtree() {
    NodeRange r = curRange();
    RootedTree g = r.render.getTree();
    synchronized (g) {
      g.deleteSubtree(curNode());
    }
  }

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Examples of org.phylowidget.tree.RootedTree

    t.modPlus();
    layout();
  }


  public void treeAutoSort() {
    RootedTree tree = getCurTree();
    tree.ladderizeSubtree(tree.getRoot());
    layout();
  }

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Examples of org.phylowidget.tree.RootedTree

    tree.ladderizeSubtree(tree.getRoot());
    layout();
  }


  public void treeRemoveElbows() {
    RootedTree tree = getCurTree();
    synchronized (tree) {
      tree.cullElbowsBelow(tree.getRoot());
    }
    layout();
  }

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