Package reaction

Examples of reaction.Item

269
270
271
272
273
274
275
276
277
278
  {
    this.cell = new Cell();
   
    // Load up Cell with goodies (infect the cell and add other ribosomes
    // and proteins)
    this.cell.templates.initialize(new Item(this.virus.genomeFullname(), this.moi, 0.0));
    this.cell.proteins.initialize(new Item(Virus.POLYMERASE, this.moi * this.virus.getComposition().getComponentCount(Virus.POLYMERASE), 0.0));
    this.cell.proteins.initialize(new Item(Virus.M.name, this.moi * this.virus.getComposition().getComponentCount(Virus.M.name), 0.0));
    this.cell.proteins.initialize(new Item(Cell.PROTEIN_RIBOSOME, Cell.initialRibosomes, 0.0));
  }
View Full Code Here
315
316
317
318
319
320
321
322
323
324
325
326
327
328
  {
    this.cell = new Cell();
   
    // Load up Cell with goodies (infect the cell and add other ribosomes and proteins)
   
    this.cell.templates.initialize(new Item(this.virus.genomeFullname(), this.moi, 0.0));
    this.cell.proteins.initialize(new Item(Virus.POLYMERASE, this.moi * this.virus.getComposition().getComponentCount(Virus.POLYMERASE), 0.0));
   
    this.cell.templates.initialize(new Item(this.dip.genomeName(), this.modip, 0.0));
    this.cell.proteins.initialize(new Item(DIP.POLYMERASE, this.modip * this.dip.getComposition().getComponentCount(DIP.POLYMERASE), 0.0));
   
    this.cell.proteins.initialize(new Item(Cell.PROTEIN_RIBOSOME, this.cell.initialRibosomes, 0.0));
    this.cell.proteins.initialize(new Item(Cell.PROTEIN_DETECTION, this.cell.initialDetectionProteins, 0.0));
  }
View Full Code Here
279
280
281
282
283
284
285
286
287
288
  {
    this.cell = new Cell();
   
    // Load up Cell with goodies (infect the cell and add other ribosomes
    // and proteins)
    this.cell.templates.initialize(new Item(this.virus.genPolComplex.name, this.moi, 0.0));
    this.cell.proteins.initialize(new Item(Virus.POLYMERASE, this.moi * this.virus.getComposition().getComponentCount(Virus.POLYMERASE), 0.0));
    this.cell.proteins.initialize(new Item(Cell.PROTEIN_RIBOSOME, this.cell.initialRibosomes, 0.0));
    this.cell.proteins.initialize(new Item(Cell.PROTEIN_DETECTION, this.cell.initialDetectionProteins, 0.0));
  }
View Full Code Here
133
134
135
136
137
138
139
140
141
142
143
144
145
    Vector<Double> resultsProteins = new Vector<Double>();
    Vector<Double> time = new Vector<Double>();
   
    // Initialize Cell Amounts
    Cell cell = new Cell();
    cell.templates.initialize(new Item("Template", templates, 0.0));
    cell.proteins.initialize(new Item("Rib", ribosomes, 0.0));
    cell.proteins.initialize(new Item("Pol", polymerases, 0.0));
   
    Vector<Reaction> rxns = new Vector<Reaction>();
   
    // Add reactions
    TestPolymeraseRxn transcription = new TestPolymeraseRxn(cell.templates, "Template", cell.proteins, "Pol", kms, transcriptDelay, cell.transcripts);
View Full Code Here
163
164
165
166
167
168
169
170
171
172
173
174
175
    Vector<Double> resultsPols = new Vector<Double>();
    Vector<Double> time = new Vector<Double>();
   
    // Initialize Cell Amounts
   
    cell.initialize(new Item(TEMPLATE, initTemplates, 0.0));
    cell.initialize(new Item(RIB, initRibs, 0.0));
    cell.initialize(new Item(POL, initPols, 0.0));
   
    Vector<Reaction> rxns = new Vector<Reaction>();
   
    // Add reactions
    rxns.add(mod.getNtRxn());
View Full Code Here
TOP

Related Classes of reaction.Item

  • simulation.SimplifiedModel
  • simulation.Tester
  • vsv.DIPModel
  • vsv.VSVModel
  • vsv.VSVModelExplicit
    • Copyright © 2018 www.massapicom. All rights reserved.
    All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.