Examples of RelationshipTypeFilterCriteria

org.openbel.framework.api.RelationshipTypeFilterCriteria
@author julianjray
org.openbel.framework.ws.model.RelationshipTypeFilterCriteria
amework.org/ws/schemas}FilterCriteria"> <sequence> <element name="valueSet" type="{http://belframework.org/ws/schemas}RelationshipType" maxOccurs="unbounded"/> </sequence> </extension> </complexContent> </complexType>

Examples of org.openbel.framework.api.RelationshipTypeFilterCriteria

    public void testGetKamWithOppositeFiltersReturnsNothing()
            throws SQLException {
        KamInfo kamInfo = testKam.getKamInfo();
        KamFilter kamFilter = kamInfo.createKamFilter();


        RelationshipTypeFilterCriteria c1 = new RelationshipTypeFilterCriteria(),
                c2 = new RelationshipTypeFilterCriteria();
        c1.add(RelationshipType.INCREASES);
        c2.add(RelationshipType.DECREASES);
        kamFilter.add(c1);
        kamFilter.add(c2);


        KamProtoNodesAndEdges all = dao.getKamProtoNodesAndEdges(kamInfo, kamFilter);
        Map<Integer, KamProtoNode> nodes = all.getKamProtoNodes();

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Examples of org.openbel.framework.api.RelationshipTypeFilterCriteria


    @Test
    public void testGetKamWithDuplicateFiltersIsIdempotent()
            throws SQLException {


        RelationshipTypeFilterCriteria c = new RelationshipTypeFilterCriteria();
        c.add(RelationshipType.HAS_COMPONENT);


        testIdempotency(c);
    }

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Examples of org.openbel.framework.api.RelationshipTypeFilterCriteria

        testIdempotency(c);
    }


    @Test
    public void testGetKamIsCommutative() throws SQLException {
        RelationshipTypeFilterCriteria c1 = new RelationshipTypeFilterCriteria(),
                c2 = new RelationshipTypeFilterCriteria();
        c1.add(RelationshipType.INCREASES);
        c2.add(RelationshipType.DECREASES);
        c2.setInclude(false);


        testCommutativity(c1, c2);
    }

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Examples of org.openbel.framework.api.RelationshipTypeFilterCriteria

    public void testGetKamIsCorrect() throws IllegalAccessException,
            IllegalArgumentException, InvocationTargetException,
            InstantiationException, SQLException, ParseException {
        KamFilter f = testKam.getKamInfo().createKamFilter();


        RelationshipTypeFilterCriteria r = new RelationshipTypeFilterCriteria();
        r.add(RelationshipType.ANALOGOUS);
        r.add(RelationshipType.INCLUDES);
        r.add(RelationshipType.INCREASES);
        r.setInclude(false);


        CitationFilterCriteria c = new CitationFilterCriteria();
        Citation[] citations = new Citation[] {
                citation.newInstance(
                        "Trends in molecular medicine", "12928037", "", null,

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Examples of org.openbel.framework.ws.model.RelationshipTypeFilterCriteria

        assertThat(r, is(not(nullValue())));


        final KamHandle handle = loadKam(kamName);


        EdgeFilter f = factory.createEdgeFilter();
        RelationshipTypeFilterCriteria c = factory
                .createRelationshipTypeFilterCriteria();
        c.getValueSet().add(r);
        f.getRelationshipCriteria().add(c);


        final FindKamEdgesRequest ereq = factory.createFindKamEdgesRequest();
        ereq.setFilter(f);
        ereq.setHandle(handle);

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