Examples of RelationArgument

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
      for(BinaryTextRelation relation : Lists.newArrayList(JCasUtil.select(goldView, BinaryTextRelation.class))) {
        if(! relation.getCategory().equals("CONTAINS")) {
          continue;
        }
       
        RelationArgument arg1 = relation.getArg1();                                                                            
        RelationArgument arg2 = relation.getArg2();
        String event1Text;
        String event2Text;
        if(arg1.getArgument() instanceof EventMention && arg2.getArgument() instanceof EventMention) {
          event1Text = Utils.normalizeEventText(jCas, arg1.getArgument());
          event2Text = Utils.normalizeEventText(jCas, arg2.getArgument());
        } else {
          // this is not an event-event relation
          continue;
        }

        if(textToDistribution.containsKey(event1Text) && textToDistribution.containsKey(event2Text)) {
          // there is duration information for both arguments
          float event1ExpectedDuration = Utils.expectedDuration(textToDistribution.get(event1Text));
          float event2ExpectedDuration = Utils.expectedDuration(textToDistribution.get(event2Text));
          String context = Utils.getTextBetweenAnnotations(goldView, arg1.getArgument(), arg2.getArgument());
          String out = String.format("%s|%.5f|%s|%.5f|%s\n",
              event1Text, event1ExpectedDuration * 3650,
              event2Text, event2ExpectedDuration * 3650,
              context.length() < 80 ? context : "...");
          try {
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

148
149
150
151
152
153
154
155
156
157
158
159
160
161
     //      final Attribute tlinkAttribute = tlinkType.getAsAttribute();
     ////      if ( entityB instanceof Timex ) {
     ////         System.out.println( "TRTA2 " + entityA.getSpannedText() + " " + tlinkType.getValue() + " " + entityB.getSpannedText() + " " + timeRelationType );
     ////      }
     //      return new DefaultRelation( entityA, entityB, tlinkClass, "Closure", tlinkAttribute );
     RelationArgument arg1 = new RelationArgument(jCas);
     arg1.setArgument(entityA);
     RelationArgument arg2 = new RelationArgument(jCas);
     arg2.setArgument(entityB);
     BinaryTextRelation relation = new BinaryTextRelation(jCas);
     relation.setArg1(arg1);
     relation.setArg2(arg2);
     relation.setCategory(tlinkType.name().replace( "_", "-" ));//check if this is correct
     return relation;
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
      throw new AnalysisEngineProcessException(e);                                                                          
    }                                                                                                                                                                                                                                        
   
    // remove relations where one or both arguments have no duration data
    for(BinaryTextRelation relation : Lists.newArrayList(JCasUtil.select(goldView, BinaryTextRelation.class))) {           
      RelationArgument arg1 = relation.getArg1();                                                                            
      RelationArgument arg2 = relation.getArg2();
     
      String eventText;
      String timeText;
      if(arg1.getArgument() instanceof TimeMention && arg2.getArgument() instanceof EventMention) {
        timeText = arg1.getArgument().getCoveredText().toLowerCase();
        eventText = Utils.normalizeEventText(jCas, arg2.getArgument());
      } else if(arg1.getArgument() instanceof EventMention && arg2.getArgument() instanceof TimeMention) {
        eventText = Utils.normalizeEventText(jCas, arg1.getArgument());
        timeText = arg2.getArgument().getCoveredText().toLowerCase(); 
      } else {
        // this is not a event-time relation
        continue;
      }   

      HashSet<String> timeUnits = Utils.getTimeUnits(timeText);
      if(textToDistribution.containsKey(eventText) && timeUnits.size() > 0) {
        // there is duration information and we are able to get time units, so keep this
        continue;
      }
     
      arg1.removeFromIndexes();                                                                                           
      arg2.removeFromIndexes();                                                                                           
      relation.removeFromIndexes();
    }
   
    // remove events (that didn't participate in relations) that have no data
    for(EventMention mention : Lists.newArrayList(JCasUtil.select(goldView, EventMention.class))) {
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
    } catch (CASException e) {
      throw new AnalysisEngineProcessException(e);
    }
   
    for(BinaryTextRelation relation : Lists.newArrayList(JCasUtil.select(goldView, BinaryTextRelation.class))) {           
      RelationArgument arg1 = relation.getArg1();                                                                            
      RelationArgument arg2 = relation.getArg2();

      String event2Text;
      String event1Text;
      if(arg1.getArgument() instanceof EventMention && arg2.getArgument() instanceof EventMention) {
        event1Text = arg1.getArgument().getCoveredText().toLowerCase();
        event2Text = arg2.getArgument().getCoveredText().toLowerCase();
      } else {
        // this is not an event-event relation
        continue;
      }
     
      List<EventMention> coveringSystemEventMentions1 = JCasUtil.selectCovered(
          systemView,
          EventMention.class,
          arg1.getArgument().getBegin(),
          arg1.getArgument().getEnd());

      List<EventMention> coveringSystemEventMentions2 = JCasUtil.selectCovered(
          systemView,
          EventMention.class,
          arg2.getArgument().getBegin(),
          arg2.getArgument().getEnd());
     
      if(coveringSystemEventMentions1.size() > 0 && coveringSystemEventMentions2.size() > 0) {
        // keep this relation instance
        System.out.println("keeping: " + event1Text + "-" + event2Text);
        continue;
      }
     
      System.out.println("removing: " + event1Text + "-" + event2Text);
      arg1.removeFromIndexes();                                                                                           
      arg2.removeFromIndexes();                                                                                           
      relation.removeFromIndexes();
    }
   
    for(EventMention mention : Lists.newArrayList(JCasUtil.select(goldView, EventMention.class))) {
      List<EventMention> coveringSystemEventMentions = JCasUtil.selectCovered(
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
      for(BinaryTextRelation relation : Lists.newArrayList(JCasUtil.select(goldView, BinaryTextRelation.class))) {
        if(! relation.getCategory().equals("CONTAINS")) {
          continue;
        }

        RelationArgument arg1 = relation.getArg1();                                                                            
        RelationArgument arg2 = relation.getArg2();
        String eventText;
        String timeText;
        if(arg1.getArgument() instanceof TimeMention && arg2.getArgument() instanceof EventMention) {
          timeText = arg1.getArgument().getCoveredText().toLowerCase();
          eventText = arg2.getArgument().getCoveredText().toLowerCase(); 
        } else if(arg1.getArgument() instanceof EventMention && arg2.getArgument() instanceof TimeMention) {
          eventText = arg1.getArgument().getCoveredText().toLowerCase();
          timeText = arg2.getArgument().getCoveredText().toLowerCase(); 
        } else {
          continue; // not an event-time relation
        }   

        // occasionally event text has a leading eol character
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
    } catch (CASException e) {
      throw new AnalysisEngineProcessException(e);
    }

    for(BinaryTextRelation relation : Lists.newArrayList(JCasUtil.select(goldView, BinaryTextRelation.class))) {           
      RelationArgument arg1 = relation.getArg1();                                                                            
      RelationArgument arg2 = relation.getArg2();

      String eventText;
      String timeText;
      List<EventMention> coveringSystemEventMentions;
      if(arg1.getArgument() instanceof TimeMention && arg2.getArgument() instanceof EventMention) {
        timeText = arg1.getArgument().getCoveredText().toLowerCase();
        eventText = arg2.getArgument().getCoveredText().toLowerCase();
        coveringSystemEventMentions = JCasUtil.selectCovered(
            systemView,
            EventMention.class,
            arg2.getArgument().getBegin(),
            arg2.getArgument().getEnd());
      } else if(arg1.getArgument() instanceof EventMention && arg2.getArgument() instanceof TimeMention) {
        eventText = arg1.getArgument().getCoveredText().toLowerCase();
        timeText = arg2.getArgument().getCoveredText().toLowerCase();
        coveringSystemEventMentions = JCasUtil.selectCovered(
            systemView,
            EventMention.class,
            arg1.getArgument().getBegin(),
            arg1.getArgument().getEnd());
      } else {
        // this is not a event-time relation
        continue;
      }   

      if(coveringSystemEventMentions.size() > 0) {
        // keep this instance
        System.out.println("keeping: " + timeText + "-" + eventText);
        continue;
      }

      System.out.println("removing: "+ timeText + "-" + eventText);
      arg1.removeFromIndexes();                                                                                           
      arg2.removeFromIndexes();                                                                                           
      relation.removeFromIndexes();
    }

    // remove events (that didn't participate in relations) not discovered by dictionary lookup
    for(EventMention mention : Lists.newArrayList(JCasUtil.select(goldView, EventMention.class))) {
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
      }

      // add new, transitive relations
      for (Annotation contained : isContainedIn.keySet()) {
        for (Annotation container : isContainedIn.get(contained)) {
          RelationArgument arg1 = new RelationArgument(jCas);
          arg1.setArgument(container);
          RelationArgument arg2 = new RelationArgument(jCas);
          arg2.setArgument(contained);
          BinaryTextRelation relation = new BinaryTextRelation(jCas);
          relation.setArg1(arg1);
          relation.setArg2(arg2);
          relation.setCategory("CONTAINS");
          arg1.addToIndexes();
          arg2.addToIndexes();
          relation.addToIndexes();
        }
      }
    }
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
          containsRelations.add(relation);
        }
      }

      for (BinaryTextRelation relation : containsRelations) {
        RelationArgument arg1 = (RelationArgument) relation.getArg1().clone();
        RelationArgument arg2 = (RelationArgument) relation.getArg2().clone();
        BinaryTextRelation newrelation = new BinaryTextRelation(jCas);
        newrelation.setArg1(arg1);
        newrelation.setArg2(arg2);
        newrelation.setCategory("OVERLAP");
        arg1.addToIndexes();
        arg2.addToIndexes();
        newrelation.addToIndexes();
      }
    }
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
        Annotation argA = orelation.getArg1().getArgument();
        Annotation argB = orelation.getArg2().getArgument();
        //add overlap
        if (!overlaps.containsEntry(argB, argA)) {
          //create a new flipped relation:
          RelationArgument arg1 = new RelationArgument(jCas);
          arg1.setArgument(argB);
          RelationArgument arg2 = new RelationArgument(jCas);
          arg2.setArgument(argA);
          BinaryTextRelation relation = new BinaryTextRelation(jCas);
          relation.setArg1(arg1);
          relation.setArg2(arg2);
          relation.setCategory("OVERLAP");
          arg1.addToIndexes();
          arg2.addToIndexes();
          relation.addToIndexes();
          overlaps.put(argB, argA);
        }

      }
View Full Code Here

Examples of org.apache.ctakes.typesystem.type.relation.RelationArgument

1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
      if (!temporalRelation.isEmpty()){
        TLinkTypeArray2 relationArray = new TLinkTypeArray2(temporalRelation, new AnnotationIdCollection(temporalRelation));

        int addedCount = 0;
        for (BinaryTextRelation relation : relationArray.getClosedTlinks(jCas)) {
          RelationArgument arg1 = relation.getArg1();
          RelationArgument arg2 = relation.getArg2();
          String relationType = relation.getCategory();
          if(relationType.equals("CONTAINED-BY")||relationType.equals("AFTER")){//ignore these two categories, because their reciprocal already exist.
            continue;
          }
          //check if the inferred relation new:
          Collection<BinaryTextRelation> relations = annotationsToRelation.get(Arrays.asList(arg1.getArgument(), arg2.getArgument()));
          if(relations.isEmpty()){ //if haven't seen this inferred relation before, then add this relation
            arg1.addToIndexes();
            arg2.addToIndexes();
            relation.addToIndexes();
            addedCount++;
          }   
        }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.