return maxBaseTo;
}
private void appendTransformedLocalLines(int baseLineIndex, int to, List transformedLocalLines, OutputStream result) throws IOException {
for (baseLineIndex++; baseLineIndex < to; baseLineIndex++) {
final QSequenceLine sequenceLine = (QSequenceLine)transformedLocalLines.get(baseLineIndex);
if (sequenceLine == null) {
throw new RuntimeException();
}
writeLine(result, sequenceLine);
}