Examples of QSequenceDifferenceBlockShifter

Examples of de.regnis.q.sequence.QSequenceDifferenceBlockShifter

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    final QSequenceLineMemoryCache rightCache = QSequenceLineMemoryCache.read(rightStream, simplifier);
    final QSequenceLineMedia lineMedia = new QSequenceLineMedia(leftCache, rightCache);
    final QSequenceCachingMedia cachingMedia = new QSequenceCachingMedia(lineMedia, new QSequenceDummyCanceller());
    final QSequenceDiscardingMedia discardingMedia = new QSequenceDiscardingMedia(cachingMedia, new QSequenceDiscardingMediaNoConfusionDectector(true), new QSequenceDummyCanceller());
    final List blocks = new QSequenceDifference(discardingMedia, discardingMedia, getSearchDepth(lineMedia, searchDepthExponent)).getBlocks();
    new QSequenceDifferenceBlockShifter(cachingMedia, cachingMedia).shiftBlocks(blocks);
    return new QSequenceLineResult(blocks, leftCache, rightCache);
  }
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Examples of de.regnis.q.sequence.QSequenceDifferenceBlockShifter

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  static QSequenceLineResult createBlocksInFilesystem(QSequenceLineRAData leftData, QSequenceLineRAData rightData, QSequenceLineTempDirectoryFactory tempDirectoryFactory, double searchDepthExponent, int memoryThreshold, int fileSegmentSize, QSequenceLineSimplifier simplifier) throws IOException, QSequenceException {
    final QSequenceLineFileSystemCache leftCache = QSequenceLineFileSystemCache.create(leftData, tempDirectoryFactory, memoryThreshold, fileSegmentSize, simplifier);
    final QSequenceLineFileSystemCache rightCache = QSequenceLineFileSystemCache.create(rightData, tempDirectoryFactory, memoryThreshold, fileSegmentSize, simplifier);
    final QSequenceLineMedia lineMedia = new QSequenceLineMedia(leftCache, rightCache);
    final List blocks = new QSequenceDifference(lineMedia, new QSequenceMediaDummyIndexTransformer(lineMedia), getSearchDepth(lineMedia, searchDepthExponent)).getBlocks();
    new QSequenceDifferenceBlockShifter(lineMedia, lineMedia).shiftBlocks(blocks);
    return new QSequenceLineResult(blocks, leftCache, rightCache);
  }
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Examples of de.regnis.q.sequence.QSequenceDifferenceBlockShifter

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    final QSequenceLineMemoryCache rightCache = QSequenceLineMemoryCache.read(rightStream, simplifier);
    final QSequenceLineMedia lineMedia = new QSequenceLineMedia(leftCache, rightCache);
    final QSequenceCachingMedia cachingMedia = new QSequenceCachingMedia(lineMedia, new QSequenceDummyCanceller());
    final QSequenceDiscardingMedia discardingMedia = new QSequenceDiscardingMedia(cachingMedia, new QSequenceDiscardingMediaNoConfusionDectector(true), new QSequenceDummyCanceller());
    final List blocks = new QSequenceDifference(discardingMedia, discardingMedia, getSearchDepth(lineMedia, searchDepthExponent)).getBlocks();
    new QSequenceDifferenceBlockShifter(cachingMedia, cachingMedia).shiftBlocks(blocks);
    return new QSequenceLineResult(blocks, leftCache, rightCache);
  }
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Examples of de.regnis.q.sequence.QSequenceDifferenceBlockShifter

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  static QSequenceLineResult createBlocksInFilesystem(QSequenceLineRAData leftData, QSequenceLineRAData rightData, QSequenceLineTempDirectoryFactory tempDirectoryFactory, double searchDepthExponent, int memoryThreshold, int fileSegmentSize, QSequenceLineSimplifier simplifier) throws IOException, QSequenceException {
    final QSequenceLineFileSystemCache leftCache = QSequenceLineFileSystemCache.create(leftData, tempDirectoryFactory, memoryThreshold, fileSegmentSize, simplifier);
    final QSequenceLineFileSystemCache rightCache = QSequenceLineFileSystemCache.create(rightData, tempDirectoryFactory, memoryThreshold, fileSegmentSize, simplifier);
    final QSequenceLineMedia lineMedia = new QSequenceLineMedia(leftCache, rightCache);
    final List blocks = new QSequenceDifference(lineMedia, new QSequenceMediaDummyIndexTransformer(lineMedia), getSearchDepth(lineMedia, searchDepthExponent)).getBlocks();
    new QSequenceDifferenceBlockShifter(lineMedia, lineMedia).shiftBlocks(blocks);
    return new QSequenceLineResult(blocks, leftCache, rightCache);
  }
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