Examples of PtmChooser

Examples of com.compomics.util.gui.ptm.PtmChooser

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            progressDialog.setTitle("Exporting PSMs. Please Wait...");

            final int userChoice = psmSelectionComboBox.getSelectedIndex();
            ArrayList<String> ptms = new ArrayList<String>();
            if (userChoice == 3) {
                PtmChooser ptmChooser = new PtmChooser(peptideShakerGUI, peptideShakerGUI.getSearchParameters().getModificationProfile().getAllNotFixedModifications(), ptms);
                if (ptmChooser.isCanceled()) {
                    return;
                }
                ptms = ptmChooser.getSelection();
            }
            final ArrayList<String> ptmSelection = ptms;

            new Thread(new Runnable() {
                public void run() {
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Examples of com.compomics.util.gui.ptm.PtmChooser

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            progressDialog.setTitle("Exporting PSMs. Please Wait...");

            final int userChoice = psmSelectionComboBoxSwath.getSelectedIndex();
            ArrayList<String> ptms = new ArrayList<String>();
            if (userChoice == 3) {
                PtmChooser ptmChooser = new PtmChooser(peptideShakerGUI, peptideShakerGUI.getSearchParameters().getModificationProfile().getAllNotFixedModifications(), ptms);
                if (ptmChooser.isCanceled()) {
                    return;
                }
                ptms = ptmChooser.getSelection();
            }
            final ArrayList<String> ptmSelection = ptms;

            new Thread(new Runnable() {
                public void run() {
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