Examples of ProcessController

io.fabric8.process.manager.ProcessController
Controls a process and provides API for executing basic commands against it.
org.broadinstitute.gatk.utils.runtime.ProcessController
Facade to Runtime.exec() and java.lang.Process. Handles running a process to completion and returns stdout and stderr as strings. Creates separate threads for reading stdout and stderr, then reuses those threads for each process most efficient use is to create one of these and use it repeatedly. Instances are not thread-safe, however. TODO: java.io sometimes zombies the backround threads locking up on read(). Supposedly NIO has better ways of interrupting a blocked stream but will require a little bit of refactoring. @author Michael Koehrsen @author Khalid Shakir

Examples of io.fabric8.process.manager.ProcessController


        installContext.updateContainerChecksums();


        if (installContext.isRestartRequired()) {
            LOG.info("Restarting " + container.getId() + " due to profile changes: " + installContext.getRestartReasons());
            ProcessController controller = installation.getController();
            if (controller != null && container != null && container.isAlive()) {
                controller.restart();
            }
        }
    }

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Examples of io.fabric8.process.manager.ProcessController

        // such as the operating system PATH or FABRIC8_JAVA8_HOME when not using docker containers
        JolokiaAgentHelper.substituteEnvironmentVariableExpressions(environmentVariables, System.getenv(), null, null, true);
    }


    protected static ProcessConfig getProcessConfig(Installation installation) {
        ProcessController controller = installation.getController();
        return controller.getConfig();
    }

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Examples of io.fabric8.process.manager.ProcessController

        String id = requirements.getId();


        Installation installation = findProcessInstallation(id);
        // for now lets remove it just in case! :)
        if (installation != null) {
            ProcessController controller = installation.getController();
            try {
                controller.stop();
            } catch (Exception e) {
                LOG.warn("Ignored exception while trying to stop process " + installation + " " + e);
            }
            controller.uninstall();
            controller = null;
        }
    }

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Examples of io.fabric8.process.manager.ProcessController

        // TODO we should support different kinds of controller based on the kind of installation
        // we could maybe discover a descriptor file to describe how to control the process?
        // or generate this file on installation time?


        File installDir = findInstallDir(rootDir);
        ProcessController controller = createController(id, config, rootDir, installDir);
        // TODO need to read the URL from somewhere...
        Installation installation = new Installation(url, id, installDir, controller, config);
        installations.put(id, installation);
        return installation;
    }

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Examples of io.fabric8.process.manager.ProcessController


    private void updateConfig(String pid, Installation installation, Map<String, String> env) throws ConfigurationException {


        try {


            final ProcessController controller = installation.getController();
            final boolean running = (controller.status() == 0);


            // stop if running, since config may not be changed while process is running
            if (running) {
                controller.stop();
            }


            // refresh environment variables in process config
            installation.getEnvironment().putAll(env);


            // re-configure the install using new environment variables
            controller.configure();


            // restart if it was running before
            if (running) {
                controller.start();
            }


        } catch (Exception e) {
            String msg = "Error updating process " + pid + ": " + e.getMessage();
            LOG.error(msg, e);

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Examples of org.broadinstitute.gatk.utils.runtime.ProcessController

    }


    @Test(dataProvider = "ExtensionsTest")
    public void testExtensions(final CatVariantsTestProvider cfg) throws IOException {


        ProcessController pc = ProcessController.getThreadLocal();
        ProcessSettings ps = new ProcessSettings(cfg.getCmdLine().split("\\s+"));
        pc.execAndCheck(ps);


        MD5DB.MD5Match result = md5db.testFileMD5("testExtensions", "CatVariantsTestProvider", cfg.outputFile, cfg.md5, false);
        if(result.failed) {
            final MD5Mismatch failure = new MD5Mismatch(result.actualMD5, result.expectedMD5, result.diffEngineOutput);
            Assert.fail(failure.toString());

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Examples of org.broadinstitute.gatk.utils.runtime.ProcessController

                BaseTest.b37KGReference,
                CatVariantsVcf1,
                CatVariantsVcf2,
                BaseTest.createTempFile("CatVariantsTest", ".bcf"));


        ProcessController pc = ProcessController.getThreadLocal();
        ProcessSettings ps = new ProcessSettings(cmdLine.split("\\s+"));
        pc.execAndCheck(ps);
    }

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Examples of org.broadinstitute.gatk.utils.runtime.ProcessController

                BaseTest.b37KGReference,
                CatVariantsVcf1,
                CatVariantsBcf2,
                BaseTest.createTempFile("CatVariantsTest", ".vcf"));


        ProcessController pc = ProcessController.getThreadLocal();
        ProcessSettings ps = new ProcessSettings(cmdLine.split("\\s+"));
        pc.execAndCheck(ps);
    }

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Examples of org.broadinstitute.gatk.utils.runtime.ProcessController

            if (logger.isDebugEnabled()) {
                processSettings.getStdoutSettings().printStandard(true);
                processSettings.getStderrSettings().printStandard(true);
            }


            ProcessController controller = ProcessController.getThreadLocal();


            if (logger.isDebugEnabled()) {
                logger.debug("Executing:");
                for (String arg: cmd)
                    logger.debug("  " + arg);
            }
            int exitValue = controller.exec(processSettings).getExitValue();
            logger.debug("Result: " + exitValue);


            if (exitValue != 0)
                throw new RScriptExecutorException(
                        "RScript exited with " + exitValue +

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