Package picard.sam.testers

Examples of picard.sam.testers.ValidateSamTester

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        final int mergeExitStatus = runPicardCommandLine(args);
        Assert.assertEquals(mergeExitStatus, 0);
        final SAMFileReader reader = new SAMFileReader(mergedOutput);
        Assert.assertEquals(reader.getFileHeader().getSortOrder(), SAMFileHeader.SortOrder.coordinate);

        new ValidateSamTester().assertSamValid(mergedOutput);
    }
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        assertSamValid(merged);
    }

    private void assertSamValid(final File sam) {
        new ValidateSamTester().assertSamValid(sam);
    }
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Related Classes of picard.sam.testers.ValidateSamTester

  • picard.sam.MergeBamAlignmentTest
  • picard.sam.MergeSamFilesTest
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