Examples of picard.illumina.parser.readers.PosFileReader

picard.illumina.parser.readers.PosFileReader
The pos file format is one 3 Illumina formats(pos, locs, and clocs) that stores position data exclusively. pos files store position data for successive clusters in tabbed delimited coordinated pairs, 1 per file row e.g.: xPos1\tyPos1 xPos2\tyPos2 102.0\t303.3 ... xPosn-1\yPosn-1 xPosn\yPosn Where n = the total number of clusters (and therefore lines) in the file.

    protected CloseableIterator<PositionalData> makeTileIterator(final File file) {


        final AbstractIlluminaPositionFileReader fileReader;
        switch(fileType){
            case Pos:
                fileReader = new PosFileReader(file);
                break;


            case Locs:
                fileReader = new LocsFileReader(file);
                break;

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Related Classes of picard.illumina.parser.readers.PosFileReader

picard.illumina.parser.PosParser

picard.util.BasicInputParser

picard.PicardException

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