Examples of picard.illumina.parser.readers.LocsFileReader

picard.illumina.parser.readers.LocsFileReader
The locs file format is one 3 Illumina formats(pos, locs, and clocs) that stores position data exclusively. locs files store position data for successive clusters in 4 byte float pairs, described as follows: bytes 1-4 : (int?) Version number (1) bytes 5-8 : 4 byte float equaling 1.0 bytes 9-12 : unsigned int numClusters bytes 13-16: : X coordinate of first cluster (32-bit float) bytes 17-20: : Y coordinate of first cluster (32-bit float) The remaining bytes of the file store the X and Y coordinates of the remaining clusters.

            case Pos:
                fileReader = new PosFileReader(file);
                break;


            case Locs:
                fileReader = new LocsFileReader(file);
                break;


            case Clocs:
                fileReader = new ClocsFileReader(file);
                break;

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    public MultiTileLocsParser(final TileIndex tileIndex, final List<Integer> requestedTiles, final File locsFile, final int lane) {
        super(tileIndex, requestedTiles, Collections.singleton(IlluminaDataType.Position));
        final int tileNumber;
        if (requestedTiles.size() == 1) tileNumber = requestedTiles.get(0);
        else tileNumber = -1;
        this.reader = new LocsFileReader(locsFile, lane, tileNumber);
        this.lane = lane;
    }

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Related Classes of picard.illumina.parser.readers.LocsFileReader

picard.illumina.parser.MultiTileLocsParser

picard.illumina.parser.PosParser

java.nio.ByteBuffer

picard.PicardException

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