Examples of picard.illumina.parser.readers.BarcodeFileReader

picard.illumina.parser.readers.BarcodeFileReader
Reads a single barcode file line by line and returns the barcode if there was a match or NULL otherwise. Barcode.txt file Format (consists of tab delimited columns, 1 record per row) sequence_read Matched(Y/N) BarcodeSequenceMatched sequence read - the actual bases at barcode position Matched(y/n) - Y or N indicating if there was a barcode match BarcodeSequenceMatched - matched barcode sequence (empty if read did not match one of the barcodes).

    }


    private static class BarcodeDataIterator implements CloseableIterator<BarcodeData>{
        private BarcodeFileReader bfr;
        public BarcodeDataIterator(final File file) {
            bfr = new BarcodeFileReader(file);
        }

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Related Classes of picard.illumina.parser.readers.BarcodeFileReader

picard.illumina.parser.BarcodeParser$BarcodeDataIterator

picard.util.BasicInputParser

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