Package picard.illumina.parser.fakers

Examples of picard.illumina.parser.fakers.FilterFileFaker

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    /**
     * @param basecallLaneDir location of .filter file and also .bci file
     */
    MultiTileFilterFileUtil(final File basecallLaneDir, final int lane) {
        super(".filter", basecallLaneDir, basecallLaneDir, new FilterFileFaker(), lane);
    }
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                case Pos:
                    parameterizedFileUtil = new PerTileFileUtil("_pos.txt", intensityDir, new PosFileFaker(), lane);
                    utils.put(SupportedIlluminaFormat.Pos, parameterizedFileUtil);
                    break;
                case Filter:
                    parameterizedFileUtil = new PerTileFileUtil(".filter", basecallLaneDir, new FilterFileFaker(), lane);
                    utils.put(SupportedIlluminaFormat.Filter, parameterizedFileUtil);
                    break;
                case Barcode:
                    parameterizedFileUtil = new PerTileFileUtil("_barcode.txt", barcodeDir != null ? barcodeDir : basecallDir, new BarcodeFileFaker(), lane);
                    utils.put(SupportedIlluminaFormat.Barcode, parameterizedFileUtil);
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Related Classes of picard.illumina.parser.fakers.FilterFileFaker

  • picard.illumina.parser.IlluminaFileUtil
  • picard.illumina.parser.MultiTileFilterFileUtil
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