Package picard.illumina.parser.fakers

Examples of picard.illumina.parser.fakers.BclFileFaker

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    public ParameterizedFileUtil getUtil(final SupportedIlluminaFormat format) {
        ParameterizedFileUtil parameterizedFileUtil = utils.get(format);
        if (parameterizedFileUtil == null) {
            switch (format) {
                case Bcl:
                    final ParameterizedFileUtil bclFileUtil = new PerTilePerCycleFileUtil(".bcl", basecallLaneDir, new BclFileFaker(), lane);
                    final ParameterizedFileUtil gzBclFileUtil = new PerTilePerCycleFileUtil(".bcl.gz", basecallLaneDir, new BclFileFaker(), lane);
                    if (bclFileUtil.filesAvailable() && !gzBclFileUtil.filesAvailable()) {
                        parameterizedFileUtil = bclFileUtil;
                    } else if (!bclFileUtil.filesAvailable() && gzBclFileUtil.filesAvailable()) {
                        parameterizedFileUtil = gzBclFileUtil;
                    } else if (!bclFileUtil.filesAvailable() && !gzBclFileUtil.filesAvailable()) {
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Related Classes of picard.illumina.parser.fakers.BclFileFaker

  • picard.illumina.parser.IlluminaFileUtil
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