Package picard.illumina.parser

Examples of picard.illumina.parser.ParameterizedFileUtil


                    .join(", ", new ArrayList<IlluminaDataType>(unmatchedDataTypes)));
            numFailures += unmatchedDataTypes.size();
        }

        for (final IlluminaFileUtil.SupportedIlluminaFormat format : formatToDataTypes.keySet()) {
            final ParameterizedFileUtil util = fileUtil.getUtil(format);
            final List<String> failures = util.verify(expectedTiles, cycles);
            //if we have failures and we want to fake files then fake them now.
            if (!failures.isEmpty() && fakeFiles) {
                //fake files
                util.fakeFiles(expectedTiles, cycles, format);

            }
            numFailures += failures.size();
            for (final String failure : failures) {
                log.info(failure);
View Full Code Here

TOP

Related Classes of picard.illumina.parser.ParameterizedFileUtil

Copyright © 2018 www.massapicom. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.