Examples of picard.illumina.parser.OutputMapping$TwoDIndex

picard.illumina.parser.OutputMapping
An index into two dimensional arrays or other two dimensional structures where arrayIndex equals the index into the top level structure and elementIndex is equal to the index into the bottom level structure

        }


        final List<Integer> failingLanes = new ArrayList<Integer>();
        int totalFailures = 0;


        final int[] expectedCycles = new OutputMapping(readStructure).getOutputCycles();
        log.info("Checking lanes(" + StringUtil.join(",", LANES) + " in basecalls directory (" + BASECALLS_DIR
                .getAbsolutePath() + ")\n");
        log.info("Expected cycles: " + StringUtil.intValuesToString(expectedCycles));


        for (final Integer lane : LANES) {

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Related Classes of picard.illumina.parser.OutputMapping$TwoDIndex

picard.illumina.CheckIlluminaDirectory

picard.PicardException

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