Examples of PeakListRowSorter

net.sf.mzmine.util.PeakListRowSorter
Compare peak list rows either by ID, average m/z or median area of peaks

Examples of net.sf.mzmine.util.PeakListRowSorter


    PeakListRow rows[] = peakList.getRows();
    totalRows = rows.length;


    // Start with the highest peaks
    Arrays.sort(rows, new PeakListRowSorter(SortingProperty.Height,
        SortingDirection.Descending));


    // Compare each two rows against each other
    for (int i = 0; i < totalRows; i++) {

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Examples of net.sf.mzmine.util.PeakListRowSorter

          && rtRange.contains(peakRow.getAverageRT())) {
        peakRows.add(peakRow);
      }
    }


    Collections.sort(peakRows, new PeakListRowSorter(
        SortingProperty.Intensity, SortingDirection.Descending));


    if (threshold > peakRows.size())
      threshold = peakRows.size();
    for (int i = 0; i < threshold; i++) {

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Examples of net.sf.mzmine.util.PeakListRowSorter

        // Create database gateway.
        gateway = db.getModule().getGatewayClass().newInstance();


        // Identify the peak list rows starting from the biggest peaks.
        final PeakListRow[] rows = peakList.getRows();
        Arrays.sort(rows, new PeakListRowSorter(SortingProperty.Area,
            SortingDirection.Descending));


        // Initialize counters.
        numItems = rows.length;

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Examples of net.sf.mzmine.util.PeakListRowSorter

    PeakListRow rows[] = peakList.getRows();
    totalRows = rows.length;


    // Sort the array by m/z so we start with biggest peak (possible
    // complex)
    Arrays.sort(rows, new PeakListRowSorter(SortingProperty.MZ,
        SortingDirection.Descending));


    // Compare each three rows against each other
    for (int i = 0; i < totalRows; i++) {

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Examples of net.sf.mzmine.util.PeakListRowSorter

      return ExitCode.CANCEL;
    }


    RawDataFile plDataFiles[] = selectedPeakLists[0].getRawDataFiles();
    PeakListRow plRows[] = selectedPeakLists[0].getRows();
    Arrays.sort(plRows, new PeakListRowSorter(SortingProperty.MZ,
        SortingDirection.Ascending));


    getParameter(dataFiles).setChoices(plDataFiles);
    getParameter(dataFiles).setValue(plDataFiles);

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Examples of net.sf.mzmine.util.PeakListRowSorter

    // Get rows.
    final PeakListRow[] rows = peakList.getRows();
    totalRows = rows.length;


    // Start with the highest peaks.
    Arrays.sort(rows, new PeakListRowSorter(SortingProperty.Height,
        SortingDirection.Descending));


    // Compare each pair of rows against each other.
    for (int i = 0; !isCanceled() && i < totalRows; i++) {

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Examples of net.sf.mzmine.util.PeakListRowSorter

      final RTTolerance rtTolerance, final boolean requireSameId) {


    final PeakListRow[] peakListRows = origPeakList.getRows();
    final int rowCount = peakListRows.length;


    Arrays.sort(peakListRows, new PeakListRowSorter(SortingProperty.Area,
        SortingDirection.Descending));


    // Loop through all peak list rows
    processedRows = 0;
    totalRows = rowCount;

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