Examples of Pdb2gmxData

   * Creates the Empty Project Type
   * @return Empty Project type
   */
  private ProjectType createEmptyProjectType() {
    ProjectType type = new ProjectType(JSimConstants.EMPTYPROJECTSTRING);
    type.getCommandData().add(new Pdb2gmxData());
    type.getCommandData().add(new EditconfData());
    type.getCommandData().add(new GenboxData());
    type.getCommandData().add(new SimStepData());
    return type;
  }

Examples of jSimMacs.data.Pdb2gmxData


    if (name.equalsIgnoreCase(XMLConstants.PROJECTTYPE)) {
      type.setName(attributes.getValue(XMLConstants.PROJECTTYPENAME));
    } else if (name.equalsIgnoreCase(XMLConstants.PDB2GMX)) {
      processPdb2gmx = true;
      pdb2gmxData = new Pdb2gmxData();
      pdb2gmxData.setShortName(attributes
          .getValue(XMLConstants.SHORTNAMEOFTAB));
      pdb2gmxData.setName(attributes.getValue(XMLConstants.NAMEOFTAB));
      if (attributes.getValue(XMLConstants.COMMANDOPTIONS) != null) {
        pdb2gmxData.setAdditionalCommand(attributes

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