Examples of PacBioServiceWrapper

uk.ac.bbsrc.tgac.miso.core.service.integration.ws.pacbio.PacBioServiceWrapper
uk.ac.bbsrc.tgac.miso.core.service.integration.ws.solid
Wraps up a PacBioService so that, following construction, any exceptions can be caught when getting the underlying PacBioService via getPacBioService(). Without this class, applications would exit following the non-propagatable exception producing by a malfunctioning Service (e.g. unresolvable REST URL) @author Rob Davey @date 11/04/12 @since 0.1.6

Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.ws.pacbio.PacBioServiceWrapper

              }
            }
          }


          try {
            PacBioServiceWrapper pacbioServiceWrapper = ApplicationContextProvider.getApplicationContext().getBean(run.getString("sequencerName"), PacBioServiceWrapper.class);
            PacBioService pacbioService = pacbioServiceWrapper.getPacBioService();


            String plateStatus = pacbioService.getPlateStatus(URLEncoder.encode(run.getString("plateId"), "UTF-8"));
            if ("Complete".equals(plateStatus)) {
              log.debug(runName + " :: Completed");
              if (!run.has("completionDate")) {

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Examples of uk.ac.bbsrc.tgac.miso.core.service.integration.ws.pacbio.PacBioServiceWrapper

          if (platformType.equals("pacbio")) {
            for (String key : props.stringPropertyNames()) {
              if (key.startsWith("pacbio.ws.url.")) {
                String serviceName = key.substring(key.lastIndexOf(".") + 1);
                log.debug("Creating service: " + serviceName);
                PacBioServiceWrapper psw = new PacBioServiceWrapper(serviceName, URI.create(props.getProperty(key)));
                context.getBeanFactory().registerSingleton(serviceName, psw);
              }
            }
          }

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