Examples of OWLOntologyManager

org.semanticweb.owl.model.OWLOntologyManager
Author: Matthew Horridge
The University Of Manchester
Bio-Health Informatics Group Date: 24-Oct-2006
The OWLOntologyManager manages a set of ontologies. It is the main point for creating, loading and accessing ontologies.
org.semanticweb.owlapi.model.OWLOntologyManager
An {@code OWLOntologyManager} manages a set of ontologies. It is the mainpoint for creating, loading and accessing ontologies.
An {@code OWLOntologyManager} also manages the mapping betweem an ontologyand its ontology document. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

Examples of org.semanticweb.owl.model.OWLOntologyManager

    }
  }
  
  private OWLOntology loadOntology(URI uri){
    OWLOntology ontology = null;
    OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
    try{
      ontology = manager.loadOntologyFromPhysicalURI(uri);
      return ontology;
    }catch (OWLOntologyCreationException e) {
      this.logger.error(e);
      return null;
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

    public static void checkAnnotationCardinality(
            @Nonnull OWLOntology ontology,
            @Nullable AnnotationCardinalityReporter reporter,
            @Nullable AnnotationCardinalityConfictHandler handler)
            throws AnnotationCardinalityException {
        OWLOntologyManager manager = ontology.getOWLOntologyManager();
        OWLDataFactory factory = manager.getOWLDataFactory();
        Set<OWLAnnotationProperty> headerProperties = getProperties(factory,
                OboFormatTag.TAG_ONTOLOGY, OboFormatTag.TAG_FORMAT_VERSION,
                OboFormatTag.TAG_DATE, OboFormatTag.TAG_DEFAULT_NAMESPACE,
                OboFormatTag.TAG_SAVED_BY, OboFormatTag.TAG_AUTO_GENERATED_BY);
        checkOntologyAnnotations(headerProperties, ontology, reporter, handler,

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager


    @Test
    public void testWriteReadConvertedOWL() throws Exception {
        OBODoc oboDoc = parseOBOFile("namespace-id-rule.obo");
        OWLOntology owlOntology = convert(oboDoc);
        OWLOntologyManager manager = owlOntology.getOWLOntologyManager();
        StringDocumentTarget documentTarget = new StringDocumentTarget();
        manager.saveOntology(owlOntology, new OWLXMLDocumentFormat(),
                documentTarget);
        String owlString = documentTarget.toString();
        OWLOntologyDocumentSource documentSource = new StringDocumentSource(
                owlString);
        OWLOntology reloadedOwl = OWLManager.createOWLOntologyManager()

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

@SuppressWarnings({ "javadoc", "null" })
public class GetLoadedOntologyTest {


    @Test
    public void testConvert() throws Exception {
        OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
        String input = "Prefix(:=<http://www.example.org/#>)\nOntology(<http://example.org/>\nSubClassOf(:a :b) )";
        StringDocumentSource source = new StringDocumentSource(input);
        OWLOntology origOnt = manager.loadOntologyFromOntologyDocument(source);
        assertNotNull(origOnt);
        assertEquals(1, manager.getOntologies().size());
        assertFalse(origOnt.getOntologyID().getVersionIRI().isPresent());
        assertTrue(origOnt.getAxiomCount() > 0);
        Optional<IRI> ontologyIRI = origOnt.getOntologyID().getOntologyIRI();
        assertTrue(ontologyIRI.isPresent());
        OWLOntology newOnt = manager.getOntology(ontologyIRI.get());
        assertNotNull(newOnt);
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

     * 
     * @return The new manager.
     */
    @Nonnull
    public static OWLOntologyManager createOWLOntologyManager() {
        OWLOntologyManager instance = INJECTOR
                .getInstance(OWLOntologyManager.class);
        INJECTOR.injectMembers(instance);
        return verifyNotNull(instance);
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

    }


    @Test
    public void testCreateOntologyChangeEquals()
            throws OWLOntologyCreationException {
        OWLOntologyManager manager = OWLManager.createOWLOntologyManager();
        OWLOntology ontology = manager.createOntology();
        OWLOntologyID ontologyID = ontology.getOntologyID();
        AddAxiomData addAxiomData = new AddAxiomData(mockAxiom);
        OWLOntologyChangeRecord changeRecord = new OWLOntologyChangeRecord(
                ontologyID, addAxiomData);
        OWLOntologyChange change = changeRecord.createOntologyChange(manager);

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

                KOALA));
    }


    @Test
    public void testOntologyLoading() throws OWLException {
        OWLOntologyManager m = create();
        OWLOntology o = loadPizzaOntology(m);
        assertNotNull(o);
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

        assertNotNull(o);
    }


    @Test
    public void testOntologyLoadingFromStringSource() throws OWLException {
        OWLOntologyManager m = create();
        OWLOntology o = loadPizzaOntology(m);
        assertNotNull(o);
        // save an ontology to a document target which holds all data in memory
        StringDocumentTarget target = new StringDocumentTarget();
        m.saveOntology(o, target);
        // remove the ontology from the manager, so it can be loaded again
        m.removeOntology(o);
        // create a document source from a string
        StringDocumentSource documentSource = new StringDocumentSource(target);
        // load the ontology from a document source
        OWLOntology o2 = m.loadOntologyFromOntologyDocument(documentSource);
        assertNotNull(o2);
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

        assertNotNull(o2);
    }


    @Test
    public void testOntologyCreation() throws OWLException {
        OWLOntologyManager m = create();
        OWLOntology o = m.createOntology(EXAMPLE_IRI);
        assertNotNull(o);
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyManager

        assertNotNull(o);
    }


    @Test
    public void testShowClasses() throws OWLException {
        OWLOntologyManager m = create();
        OWLOntology o = loadPizzaOntology(m);
        assertNotNull(o);
        // These are the named classes referenced by axioms in the ontology.
        for (OWLClass cls : o.getClassesInSignature()) {
            // use the class for whatever purpose

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