Examples of OWLOntologyID

org.semanticweb.owlapi.model.OWLOntologyID
An object that identifies an ontology. Since OWL 2, ontologies do not have to have an ontology IRI, or if they have an ontology IRI then they can optionally also have a version IRI. Instances of this OWLOntologyID class bundle identifying information of an ontology together. If an ontology doesn't have an ontology IRI then we say that it is "anonymous". @author Matthew Horridge, The University of Manchester, InformationManagement Group @since 3.0.0

Examples of org.semanticweb.owlapi.model.OWLOntologyID

            Clause dvclause = hf.getClause(OboFormatTag.TAG_DATA_VERSION);
            if (dvclause != null) {
                String dv = dvclause.getValue().toString();
                IRI vIRI = IRI.create(DEFAULT_IRI_PREFIX + ontOboId + '/' + dv
                        + '/' + ontOboId + ".owl");
                OWLOntologyID oid = new OWLOntologyID(Optional.of(ontIRI),
                        Optional.of(vIRI));
                // if the ontology being read has a differet id from the one
                // that was passed in, update it
                // when parsing, the original ontology is likely an anonymous,
                // empty one
                if (!oid.equals(in.getOntologyID())) {
                    manager.applyChange(new SetOntologyID(in, oid));
                }
            } else {
                // if the ontology being read has a differet id from the one
                // that was passed in, update it
                // when parsing, the original ontology is likely an anonymous,
                // empty one
                if (!ontIRI
                        .equals(in.getOntologyID().getOntologyIRI().orNull())) {
                    manager.applyChange(new SetOntologyID(in,
                            new OWLOntologyID(Optional.of(ontIRI), Optional
                                    .<IRI> absent())));
                }
            }
        } else {
            defaultIDSpace = "TEMP";
            manager.applyChange(new SetOntologyID(in,
                    new OWLOntologyID(Optional.of(IRI.create(DEFAULT_IRI_PREFIX
                            + defaultIDSpace)), Optional.<IRI> absent())));
            // TODO - warn
        }
        trHeaderFrame(hf);
        for (Frame f : obodoc.getTypedefFrames()) {

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Examples of org.semanticweb.owlapi.model.OWLOntologyID


    @Override
    public ManchesterSyntaxDocumentFormat
            parseOntology(@Nonnull OWLOntology ont) {
        Set<OntologyAxiomPair> axioms = new HashSet<>();
        OWLOntologyID ontologyID = new OWLOntologyID();
        Set<AddImport> imports = new HashSet<>();
        Set<AddOntologyAnnotation> ontologyAnnotations = new HashSet<>();
        defaultOntology = ont;
        processDeclaredEntities();
        while (true) {

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Examples of org.semanticweb.owlapi.model.OWLOntologyID


    @SuppressWarnings("null")
    @Override
    public List<OWLOntologyChange> repair() {
        // XXX arbitrary replacement
        return list(new SetOntologyID(ontology, new OWLOntologyID(
                Optional.of(IRI.create("urn:ontology#renamed")),
                Optional.of(IRI.create("urn:ontology#renamed1")))));
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

public class OWLOntologyChangeRecordTest {


    @SuppressWarnings("null")
    @Test
    public void testSerializeChangeRecord() throws Exception {
        OWLOntologyID id1 = new OWLOntologyID(Optional.of(IRI.create("urn:a")),
                Optional.of(IRI.create("urn:v1")));
        OWLOntologyID id2 = new OWLOntologyID(Optional.of(IRI.create("urn:a")),
                Optional.of(IRI.create("urn:v2")));
        OWLOntologyChangeRecord idChangeRecord = new OWLOntologyChangeRecord(
                id1, new SetOntologyIDData(id2));
        ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();
        ObjectOutputStream out = new ObjectOutputStream(byteArrayOutputStream);

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

            }
        }


        @Override
        public void visit(OWLOntology ontology) {
            OWLOntologyID ontologyID = ontology.getOntologyID();
            if (!ontologyID.isAnonymous()) {
                if (ontologyID.getOntologyIRI().get().isReservedVocabulary()) {
                    profileViolations
                            .add(new UseOfReservedVocabularyForOntologyIRI(
                                    getCurrentOntology()));
                }
                Optional<IRI> versionIRI = ontologyID.getVersionIRI();
                if (versionIRI.isPresent()) {
                    if (versionIRI.get().isReservedVocabulary()) {
                        profileViolations
                                .add(new UseOfReservedVocabularyForVersionIRI(
                                        getCurrentOntology()));

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

        OWLOntology onto = m.createOntology(ontologyAIRI);
        m.addAxiom(onto,
                df.getOWLDeclarationAxiom(Class(IRI("urn:test:testclass"))));
        IRI ontologyBIRI = IRI("http://www.semanticweb.org/ontologies/ontologyB");
        OWLOntology ontologyB = m.createOntology(ontologyBIRI);
        m.applyChange(new SetOntologyID(ontologyB, new OWLOntologyID(
                of(ontologyAIRI), absent())));
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

     * @param ont
     *        ontology to use
     * @return short form of the ontology IRI
     */
    public String getShortForm(OWLOntology ont) {
        OWLOntologyID ontologyID = ont.getOntologyID();
        if (ontologyID.getOntologyIRI().isPresent()) {
            return getShortForm(verifyNotNull(ontologyID.getOntologyIRI().get()));
        } else {
            return ontologyID.toString();
        }
    }

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

    @SuppressWarnings("null")
    @Nonnull
    public List<OWLOntologyChange> getChanges(@Nonnull OWLOntology ontology,
            @Nonnull IRI newIRI) {
        List<OWLOntologyChange> changes = new ArrayList<>();
        changes.add(new SetOntologyID(ontology, new OWLOntologyID(Optional
                .of(newIRI), ontology.getOntologyID().getVersionIRI())));
        for (OWLOntology ont : owlOntologyManager.getOntologies()) {
            assert ont != null;
            for (OWLImportsDeclaration decl : ont.getImportsDeclarations()) {
                if (decl.getIRI().equals(

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

    @Test
    public void testCreateOntologyWithIRIAndVersionIRI()
            throws OWLOntologyCreationException {
        IRI ontologyIRI = IRI("http://www.semanticweb.org/ontologies/ontology");
        IRI versionIRI = IRI("http://www.semanticweb.org/ontologies/ontology/version");
        OWLOntology ontology = m.createOntology(new OWLOntologyID(
                of(ontologyIRI), of(versionIRI)));
        assertNotNull("ontology should not be null", ontology);
        assertNotNull("ontology id should not be null",
                ontology.getOntologyID());
        assertEquals(versionIRI, ontology.getOntologyID()

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Examples of org.semanticweb.owlapi.model.OWLOntologyID

        IRI ontologyIRI = IRI("http://www.semanticweb.org/ontologies/ontology");
        IRI versionIRI = IRI("http://www.semanticweb.org/ontologies/ontology/version");
        IRI documentIRI = IRI("file:documentIRI");
        SimpleIRIMapper mapper = new SimpleIRIMapper(versionIRI, documentIRI);
        m.getIRIMappers().add(mapper);
        OWLOntology ontology = m.createOntology(new OWLOntologyID(
                of(ontologyIRI), of(versionIRI)));
        assertNotNull("ontology should not be null", ontology);
        assertNotNull("ontology id should not be null",
                ontology.getOntologyID());
        assertEquals(versionIRI, ontology.getOntologyID()

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