Examples of OWLOntologyDocumentSource

org.semanticweb.owlapi.io.OWLOntologyDocumentSource
A document source provides a point for loading an ontology. A document source may provide three ways of obtaining an ontology document:
1. From a {@link java.io.Reader}
2. From an {@link java.io.InputStream}
3. From an ontology document {@link org.semanticweb.owlapi.model.IRI}
Consumers that use a document source will attempt to obtain a concrete representation of an ontology in the above order.
Note that while an ontology document source may appear similar to a SAX input source, an important difference is that the getReader and getInputStream methods return new instances each time the method is called. This allows multiple attempts at loading an ontology. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        if (axioms == null || axioms.isEmpty()) {
            return null;
        }
        try {
            OWLFunctionalSyntaxOWLParser p = new OWLFunctionalSyntaxOWLParser();
            OWLOntologyDocumentSource documentSource = new StringDocumentSource(
                    axioms);
            OWLOntology ontology = translationManager.createOntology();
            p.parse(documentSource, ontology,
                    translationManager.getOntologyLoaderConfiguration());
            return ontology.getAxioms();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        OWLOntologyManager manager = owlOntology.getOWLOntologyManager();
        StringDocumentTarget documentTarget = new StringDocumentTarget();
        manager.saveOntology(owlOntology, new OWLXMLDocumentFormat(),
                documentTarget);
        String owlString = documentTarget.toString();
        OWLOntologyDocumentSource documentSource = new StringDocumentSource(
                owlString);
        OWLOntology reloadedOwl = OWLManager.createOWLOntologyManager()
                .loadOntologyFromOntologyDocument(documentSource);
        assertEquals(owlOntology.getAxiomCount(), reloadedOwl.getAxiomCount());
    }

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

            }
            InputStream lumifyBaseOntologyIn = ((StreamingPropertyValue) ontologyFile.getValue()).getInputStream();
            try {
                Reader lumifyBaseOntologyReader = new InputStreamReader(lumifyBaseOntologyIn);
                LOGGER.info("Loading existing ontology: %s", ontologyFile.getKey());
                OWLOntologyDocumentSource lumifyBaseOntologySource = new ReaderDocumentSource(lumifyBaseOntologyReader, ontologyFileIRI);
                try {
                    OWLOntology o = m.loadOntologyFromOntologyDocument(lumifyBaseOntologySource, config);
                    loadedOntologies.add(o);
                } catch (UnloadableImportException ex) {
                    LOGGER.error("Could not load %s", ontologyFileIRI, ex);

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        Reader inFileReader = new InputStreamReader(new ByteArrayInputStream(inFileData));


        OWLOntologyLoaderConfiguration config = new OWLOntologyLoaderConfiguration();
        OWLOntologyManager m = createOwlOntologyManager(config, documentIRI);


        OWLOntologyDocumentSource documentSource = new ReaderDocumentSource(inFileReader, documentIRI);
        OWLOntology o = m.loadOntologyFromOntologyDocument(documentSource, config);


        storeOntologyFile(new ByteArrayInputStream(inFileData), documentIRI);


        long totalStartTime = System.currentTimeMillis();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

            }
            InputStream lumifyBaseOntologyIn = new ByteArrayInputStream(owlData.data);
            try {
                Reader lumifyBaseOntologyReader = new InputStreamReader(lumifyBaseOntologyIn);
                LOGGER.info("Loading existing ontology: %s", owlData.iri);
                OWLOntologyDocumentSource lumifyBaseOntologySource = new ReaderDocumentSource(lumifyBaseOntologyReader, lumifyBaseOntologyIRI);
                OWLOntology o = m.loadOntologyFromOntologyDocument(lumifyBaseOntologySource, config);
                loadedOntologies.add(o);
            } finally {
                lumifyBaseOntologyIn.close();
            }

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        manager = OWLManager.createOWLOntologyManager();
    }


    @Test(expected = OWLOntologyAlreadyExistsException.class)
    public void testMultipleVersionLoadChangeIRI() throws Exception {
        OWLOntologyDocumentSource initialDocumentSource = getDocument();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v2));
        OWLOntology initialOntology = manager
                .createOntology(initialUniqueOWLOntologyID);
        OWLParser initialParser = new RDFXMLParser();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

                "/owlapi/multipleOntologyLoadsTest.rdf"));
    }


    @Test(expected = OWLOntologyAlreadyExistsException.class)
    public void testMultipleVersionLoadNoChange() throws Exception {
        OWLOntologyDocumentSource documentSource = getDocument();
        OWLOntologyID expected = new OWLOntologyID(Optional.of(jb),
                Optional.of(v1));
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v1));
        OWLOntology initialOntology = manager

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

        }
    }


    @Test
    public void testMultipleVersionLoadsExplicitOntologyIDs() throws Exception {
        OWLOntologyDocumentSource documentSource = getDocument();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v1));
        OWLOntology initialOntology = manager
                .createOntology(initialUniqueOWLOntologyID);
        OWLParser parser = new RDFXMLParser();
        parser.parse(documentSource, initialOntology, config);
        assertEquals(jb, initialOntology.getOntologyID().getOntologyIRI().get());
        assertEquals(v1, initialOntology.getOntologyID().getVersionIRI().get());
        OWLOntologyDocumentSource secondDocumentSource = getDocument();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v2));
        OWLOntology secondOntology = manager
                .createOntology(secondUniqueOWLOntologyID);
        OWLParser secondParser = new RDFXMLParser();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    }


    @Test
    public void testMultipleVersionLoadsNoOntologyIDFirstTime()
            throws Exception {
        OWLOntologyDocumentSource documentSource = getDocument();
        OWLOntology initialOntology = manager.createOntology();
        OWLParser parser = new RDFXMLParser();
        parser.parse(documentSource, initialOntology, config);
        assertEquals(IRI("http://test.example.org/ontology/0139"),
                initialOntology.getOntologyID().getOntologyIRI().get());
        assertEquals(v1, initialOntology.getOntologyID().getVersionIRI().get());
        OWLOntologyDocumentSource secondDocumentSource = getDocument();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v2));
        OWLOntology secondOntology = manager
                .createOntology(secondUniqueOWLOntologyID);
        OWLParser secondParser = new RDFXMLParser();

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Examples of org.semanticweb.owlapi.io.OWLOntologyDocumentSource

    }


    @Test
    public void testMultipleVersionLoadsNoOntologyVersionIRIFirstTime()
            throws Exception {
        OWLOntologyDocumentSource documentSource = getDocument();
        OWLOntologyID initialUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.<IRI> absent());
        OWLOntology initialOntology = manager
                .createOntology(initialUniqueOWLOntologyID);
        OWLParser parser = new RDFXMLParser();
        parser.parse(documentSource, initialOntology, config);
        assertEquals(jb, initialOntology.getOntologyID().getOntologyIRI().get());
        // FIXME: versionIRI is null for some reason even though it was in the
        // document
        assertEquals(v1, initialOntology.getOntologyID().getVersionIRI().get());
        OWLOntologyDocumentSource secondDocumentSource = getDocument();
        OWLOntologyID secondUniqueOWLOntologyID = new OWLOntologyID(
                Optional.of(jb), Optional.of(v2));
        OWLOntology secondOntology = manager
                .createOntology(secondUniqueOWLOntologyID);
        OWLParser secondParser = new RDFXMLParser();

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