Examples of OutputMapping

com.neophob.sematrix.core.glue.OutputMapping
class used to store input/ouput mapping. each visual is assigned to 0 or n screens, each screen h @author michu
com.sun.jsftemplating.layout.descriptors.handler.OutputMapping

This class holds OutputMapping value meta information for individual instances of Handler Objects. This information is necessary to provide the location to store the output value for a specific invocation of a handler. This is data consists of the name the Handler uses for the output, the OutputType, and optionally the OutputType key to use when storing/retrieving the output value.
@author Ken Paulsen (ken.paulsen@sun.com)
picard.illumina.parser.OutputMapping
In multiple locations we need to know what cycles are output, as of now we output all non-skip cycles, but rather than sprinkle this knowledge throughout the parser code, instead OutputMapping provides all the data a client might want about the cycles to be output including what ReadType they are. @author jburke@broadinstitute.org

Examples of com.neophob.sematrix.core.glue.OutputMapping

      IFader f = new Switch(matrix, 50);
      List<OutputMapping> ioMapping = new ArrayList<OutputMapping>();
      
      //testcase#1: each output has a visual assigned
    for (int n=0; n<panels; n++) {
      ioMapping.add(new OutputMapping(f, n));      
    }
      LayoutModel lom0 = l.getDataForScreen(0, ioMapping);
      assertEquals(0, lom0.getOfsX());
      assertEquals(0, lom0.getOfsY());
      assertEquals(1, lom0.getSameFxOnX());

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Examples of com.neophob.sematrix.core.glue.OutputMapping

   * @return the int
   */
  private int howManyScreensShareThisFxOnTheXAxis(int fxInput, List<OutputMapping> ioMapping) {
    int max=0;
    int min=MAXVAL;
    OutputMapping o;


    //we only have 2 rows
    for (int y=0; y<YSIZE; y++) {  
      for (int x=0; x<row1Size; x++) {
        o = ioMapping.get(row1Size*y+x);
        if (o.getVisualId()==fxInput) {
          if (x<min) {
            min=x;
          }
          //save the maximal x position
          //if there are multiple fx'es, store the max position

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Examples of com.neophob.sematrix.core.glue.OutputMapping

   * @return the int
   */
  private int howManyScreensShareThisFxOnTheYAxis(int fxInput, List<OutputMapping> ioMapping) {
    int max=0;
    int min=MAXVAL;
    OutputMapping o;


    //we only have 2 rows
    for (int x=0; x<row1Size; x++) {
      for (int y=0; y<YSIZE; y++) {
        o = ioMapping.get(row1Size*y+x);


        if (o.getVisualId()==fxInput) {
          if (y<min) {
            min=y;
          }
          //save the maximal x position
          //if there are multiple fx'es, store the max position

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Examples of com.neophob.sematrix.core.glue.OutputMapping

    // O = Visual 1
    // X = Visual 2
    //
    int xOfs = ret;
    for (int i=0; i<ret; i++) {
      OutputMapping o1 = ioMapping.get(0+i);
      OutputMapping o2 = ioMapping.get(row1Size+i);
      if ((o1.getVisualId()!=visualId) && (o2.getVisualId()!=visualId)) {        
        if (xOfs>0) {
          xOfs--;
        }
      }      
    }

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Examples of com.neophob.sematrix.core.glue.OutputMapping

              Generator g = new Fire(matrix);
              Effect e = new PassThru(matrix);
                Visual visual = new Visual(g, e, m, c);        
                    
              IFader fader = new Switch(matrix, 100);
              OutputMapping map = new OutputMapping(fader, 0);
              
                assertNotNull(matrix.getScreenBufferForDevice(visual, map));      
                assertNotNull(matrix.getScreenBufferForDevice(visual, lmDefault, map, output));
                assertNotNull(matrix.getScreenBufferForDevice(visual, lmBox1, map, output));
                assertNotNull(matrix.getScreenBufferForDevice(visual, lmBox2, map, output));

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Examples of com.neophob.sematrix.core.glue.OutputMapping

      
      MatrixData matrix = new MatrixData(8, 8);
      IFader fader = new Switch(matrix, 50);
      List<OutputMapping> ioMapping = new ArrayList<OutputMapping>();
    for (int n=0; n<panels+panels; n++) {
      ioMapping.add(new OutputMapping(fader, n));      
    }


    //testcase#1: each output has a visual assigned
      LayoutModel lom0 = l.getDataForScreen(0, ioMapping);
      assertEquals(0, lom0.getOfsX());
      assertEquals(0, lom0.getOfsY());
      assertEquals(1, lom0.getSameFxOnX());
      assertEquals(1, lom0.getSameFxOnY());
      assertEquals(0, lom0.getVisualId());
      assertEquals(true, lom0.screenDoesNotNeedStretching());
      
    //testcase#2: visual 0 is displayed on ALL outputs      
      ioMapping.clear();
    for (int n=0; n<panels+panels; n++) {
      ioMapping.add(new OutputMapping(fader, 0));      
    }
    lom0 = l.getDataForScreen(0, ioMapping);
      assertEquals(0, lom0.getOfsX());
      assertEquals(0, lom0.getOfsY());
      assertEquals(panels, lom0.getSameFxOnX());

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Examples of com.neophob.sematrix.core.glue.OutputMapping

    int[] buffer;
    Visual v;
    
    for (int screen = 0; screen < this.collector.getNrOfScreens(); screen++) {
      LayoutModel lm = this.layout.getDataForScreen(screen, Collector.getInstance().getAllOutputMappings());
      OutputMapping map = this.collector.getOutputMappings(screen);
      v = this.collector.getVisual(lm.getVisualId());
      
      if (lm.screenDoesNotNeedStretching()) {
        buffer = this.matrixData.getScreenBufferForDevice(v, map);
      } else {

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Examples of com.sun.jsftemplating.layout.descriptors.handler.OutputMapping

    + handler.getInputValue(inputKey) + "\"");
      seperator = ", ";
  }


  // Add outputs
  OutputMapping output = null;
// FIXME: Support EL output mappings, e.g.: output1="#{requestScope.bar}"
  for (String outputKey : def.getOutputDefs().keySet()) {
      output = handler.getOutputValue(outputKey);
      write(seperator + outputKey + "=>$" + output.getStringOutputType()
    + "{" + output.getOutputKey() + "}");
      seperator = ", ";
  }
  
  // Close the Handler
  write(");\n");

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Examples of picard.illumina.parser.OutputMapping

        }


        final List<Integer> failingLanes = new ArrayList<Integer>();
        int totalFailures = 0;


        final int[] expectedCycles = new OutputMapping(readStructure).getOutputCycles();
        log.info("Checking lanes(" + StringUtil.join(",", LANES) + " in basecalls directory (" + BASECALLS_DIR
                .getAbsolutePath() + ")\n");
        log.info("Expected cycles: " + StringUtil.intValuesToString(expectedCycles));


        for (final Integer lane : LANES) {

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