Examples of org.semanticweb.owlapi.util.OWLEntityRemover

org.semanticweb.owlapi.util.OWLEntityRemover
A convenience object that generates the changes which are necessary to remove an entity from a set of ontologies. This is accomplished by removing all axioms that refer to the entity. The entity remover follows the visitor design pattern, entities that need to be removed from an ontology should accept visits from the entity remover. Changes are accumulated as the entity remover visits various entities. @author Matthew Horridge, The University Of Manchester, Bio-HealthInformatics Group @since 2.0.0

     */
    public Vector<IRI> getRuleUsage(IRI ruleName){
        Vector<IRI> ruleusage = new Vector();
        OWLClass ontocls = factory.getOWLClass(IRI.create(owlIDrmi+"KReSRule"));
        OWLNamedIndividual ontoind = factory.getOWLNamedIndividual(ruleName);
        OWLEntityRemover remover = new OWLEntityRemover(owlmanager, Collections.singleton(owlmodel));
        OWLObjectProperty hasrule = factory.getOWLObjectProperty(IRI.create(owlIDrmi+"hasRule"));




        if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){


            ontoind.accept(remover);
            List<OWLOntologyChange> list = remover.getChanges();
            Iterator<OWLOntologyChange> iter = list.iterator();


            while(iter.hasNext()){
                OWLAxiom ax =iter.next().getAxiom();
                if(ax.getObjectPropertiesInSignature().contains(hasrule)){
                    String[] data = Arrays.toString(ax.getIndividualsInSignature().toArray()).split(",");
                    for(int s = 0; s<data.length;s++){
                        if(!data[s].contains(ontoind.getIRI().toString())){
                            String string = data[s].replace("<","").replace(">","").replace("[","").replace("]","").replace(" ","");
                            if(!string.startsWith("["))
                                ruleusage.add(IRI.create(string));
                        }
                    }  
                }
            }


            remover.reset();


            return(ruleusage);
        }else{
           log.error("The rule with name "+ruleName+" is not inside the ontology. Pleas check the name.");
           return(null);

View Full Code Here

   public boolean removeRule(String ruleName){
       boolean ok = false;
       OWLClass ontocls = factory.getOWLClass(IRI.create(owlIDrmi+"KReSRule"));
       OWLNamedIndividual ontoind = factory.getOWLNamedIndividual(IRI.create(owlID+ruleName));
       OWLObjectProperty hasrule = factory.getOWLObjectProperty(IRI.create(owlIDrmi+"hasRule"));
       OWLEntityRemover remover = new OWLEntityRemover(owlmanager, Collections.singleton(owlmodel));


       if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){
           
            ontoind.accept(remover);
            List<OWLOntologyChange> list = remover.getChanges();
            Iterator<OWLOntologyChange> iter = list.iterator();
            Vector<String> usage = new Vector();


            while(iter.hasNext()){
                OWLAxiom ax =iter.next().getAxiom();
                if(ax.getObjectPropertiesInSignature().contains(hasrule)){
                    usage.add(Arrays.toString(ax.getIndividualsInSignature().toArray()));
              
                }
            }


            if(usage.isEmpty()){
                        ok = true;
                        owlmanager.applyChanges(remover.getChanges());
                        remover.reset();
                    }else{
                         LoggerFactory.getLogger(RemoveRule.class).error("The rule cannot be deleted because is used by some recipes. Pleas check the following recipes:\n"+usage.toString());
                         ok = false;
                         return(ok);
                 }

View Full Code Here

   public boolean removeRule(IRI ruleName){
       boolean ok = false;
       OWLClass ontocls = factory.getOWLClass(IRI.create(owlIDrmi+"KReSRule"));
       OWLNamedIndividual ontoind = factory.getOWLNamedIndividual(ruleName);
       OWLObjectProperty hasrule = factory.getOWLObjectProperty(IRI.create(owlIDrmi+"hasRule"));
       OWLEntityRemover remover = new OWLEntityRemover(owlmanager, Collections.singleton(owlmodel));


       if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){


            ontoind.accept(remover);
            List<OWLOntologyChange> list = remover.getChanges();
            Iterator<OWLOntologyChange> iter = list.iterator();
            Vector<String> usage = new Vector();


            while(iter.hasNext()){
                OWLAxiom ax =iter.next().getAxiom();
                if(ax.getObjectPropertiesInSignature().contains(hasrule)){
                    usage.add(Arrays.toString(ax.getIndividualsInSignature().toArray()));


                }
            }


            if(usage.isEmpty()){
                        ok = true;
                        owlmanager.applyChanges(remover.getChanges());
                        remover.reset();
                    }else{
                         LoggerFactory.getLogger(RemoveRule.class).error("The rule cannot be deleted because is used by some recipes. Pleas check the following recipes:\n"+usage.toString());
                         ok = false;
                         return(ok);
                 }

View Full Code Here

    */
   public boolean removeRecipe(String recipeName){
       boolean ok = false;
       OWLClass ontocls = factory.getOWLClass(IRI.create(owlIDrmi+"Recipe"));
       OWLNamedIndividual ontoind = factory.getOWLNamedIndividual(IRI.create(owlID+recipeName));
       OWLEntityRemover remover = new OWLEntityRemover(owlmanager, Collections.singleton(owlmodel));
       OWLObjectProperty precedes = factory.getOWLObjectProperty(IRI.create("http://www.ontologydesignpatterns.org/cp/owl/sequence.owl#directlyPrecedes"));
       OWLObjectPropertyAssertionAxiom objectPropAssertion;


        GetRecipe getrecipe = new GetRecipe(storeaux);
        HashMap<IRI, String> map = getrecipe.getRecipe(recipeName);
        
        String[] sequence = map.get(IRI.create(owlID+recipeName)).split(",");
        Vector<IRI> ruleseq = new Vector();
        for(String seq : sequence){
            if(!seq.replace(" ","").trim().isEmpty())
                ruleseq.add(IRI.create(seq.replace(" ","").trim()));
        }
        HashMap<String, Integer> count = getrecipe.getBinSequenceRecipeCount();
        Vector<String> binseq = new Vector();
        String bs="";
        for(int i = 0; i<ruleseq.size()-1;i++){
            bs=ruleseq.get(i).toString()+" precedes "+ruleseq.get(i+1).toString();
            if(count.containsKey(bs)){
                if(count.get(bs)==1){
                    binseq.add(bs);
                }
            }
        }


       if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){


            ontoind.accept(remover);
            owlmanager.applyChanges(remover.getChanges());
            remover.reset();


           if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){
               log.error("Some error occurs during deletion.");
               ok = false;
               return(ok);

View Full Code Here

    */
   public boolean removeRecipe(IRI recipeName){
       boolean ok = false;
       OWLClass ontocls = factory.getOWLClass(IRI.create(owlIDrmi+"Recipe"));
       OWLNamedIndividual ontoind = factory.getOWLNamedIndividual(recipeName);
       OWLEntityRemover remover = new OWLEntityRemover(owlmanager, Collections.singleton(owlmodel));
       OWLObjectProperty precedes = factory.getOWLObjectProperty(IRI.create("http://www.ontologydesignpatterns.org/cp/owl/sequence.owl#directlyPrecedes"));
       OWLObjectPropertyAssertionAxiom objectPropAssertion;


        GetRecipe getrecipe = new GetRecipe(storeaux);
        HashMap<IRI, String> map = getrecipe.getRecipe(recipeName);
        
        String[] sequence = map.get(recipeName).split(",");
        Vector<IRI> ruleseq = new Vector();
        for(String seq : sequence){
            if(!seq.replace(" ","").trim().isEmpty())
                ruleseq.add(IRI.create(seq.replace(" ","").trim()));
        }
        HashMap<String, Integer> count = getrecipe.getBinSequenceRecipeCount();
       
        Vector<String> binseq = new Vector();
        String bs="";
        for(int i = 0; i<ruleseq.size()-1;i++){
            bs=ruleseq.get(i).toString()+" precedes "+ruleseq.get(i+1).toString();
            if(count.containsKey(bs)){
                if(count.get(bs)==1){
                    binseq.add(bs);
                }
            }
        }
   
       if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){


            ontoind.accept(remover);
            owlmanager.applyChanges(remover.getChanges());
            remover.reset();


           if(owlmodel.containsAxiom(factory.getOWLClassAssertionAxiom(ontocls, ontoind))){
               log.error("Some error occurs during deletion.");
               ok = false;
               return(ok);

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