Examples of org.semanticweb.owlapi.model.IRI$IRIImpl

org.semanticweb.owlapi.model.IRI
Author: Matthew Horridge
The University of Manchester
Information Management Group
Date: 14-Jan-2009 Represents International Resource Identifiers

     * @param classId
     *        the class id
     * @return the oWL class
     */
    protected OWLClass trClass(@Nonnull String classId) {
        IRI iri = oboIdToIRI(classId);
        return fac.getOWLClass(iri);
    }

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     *        the inst id
     * @return the oWL individual
     */
    @Nonnull
    protected OWLIndividual trIndividual(@Nonnull String instId) {
        IRI iri = oboIdToIRI(instId);
        return fac.getOWLNamedIndividual(iri);
    }

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     *        the tag
     * @return the iri
     */
    @Nonnull
    public static IRI trTagToIRI(String tag) {
        IRI iri = ANNOTATIONPROPERTYMAP.get(tag);
        if (iri == null) {
            iri = IRI.create(Obo2OWLConstants.OIOVOCAB_IRI_PREFIX + tag);
        }
        return iri;
    }

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     *        the tag
     * @return the oWL annotation property
     */
    @Nonnull
    protected OWLAnnotationProperty trTagToAnnotationProp(@Nonnull String tag) {
        IRI iri = trTagToIRI(tag);
        OWLAnnotationProperty ap = fac.getOWLAnnotationProperty(iri);
        if (!apToDeclare.contains(ap)) {
            apToDeclare.add(ap);
            add(fac.getOWLDeclarationAxiom(ap));
            Obo2OWLVocabulary vocab = Obo2OWLConstants.getVocabularyObj(tag);

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     *        the rel id
     * @return the oWL annotation property
     */
    @Nonnull
    protected OWLAnnotationProperty trAnnotationProp(@Nonnull String relId) {
        IRI iri = oboIdToIRI(mapPropId(relId));
        return fac.getOWLAnnotationProperty(iri);
    }

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     *        the rel id
     * @return the oWL object property
     */
    @Nonnull
    protected OWLObjectProperty trObjectProp(@Nonnull String relId) {
        IRI iri = oboIdToIRI(mapPropId(relId));
        return fac.getOWLObjectProperty(iri);
    }

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     *        the v
     * @return the oWL object property expression
     */
    @Nonnull
    protected OWLObjectPropertyExpression trObjectProp(@Nonnull Object v) {
        IRI iri = oboIdToIRI(mapPropId((String) v));
        return fac.getOWLObjectProperty(iri);
    }

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            throw new OWLRuntimeException(e1);
        }
        if (safeId.contains(" ")) {
            safeId = safeId.replace(" ", "_");
        }
        IRI iri = null;
        try {
            iri = IRI.create(uriPrefix + safeId);
        } catch (IllegalArgumentException e) {
            throw new OWLRuntimeException(e);
        }

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     */
    @Nonnull
    protected static Map<String, String> initAnnotationPropertyMap() {
        Map<String, String> map = new HashMap<>();
        for (String key : OWLAPIObo2Owl.ANNOTATIONPROPERTYMAP.keySet()) {
            IRI propIRI = OWLAPIObo2Owl.ANNOTATIONPROPERTYMAP.get(key);
            map.put(propIRI.toString(), key);
        }
        return map;
    }

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        }
        return true;
    }


    private boolean isMetadataTag(OWLAnnotationProperty p) {
        final IRI metadataTagIRI = IRI
                .create(Obo2OWLConstants.OIOVOCAB_IRI_PREFIX
                        + OboFormatTag.TAG_IS_METADATA_TAG.getTag());
        Set<OWLAnnotationAssertionAxiom> axioms = owlOntology
                .getAnnotationAssertionAxioms(p.getIRI());
        for (OWLAnnotationAssertionAxiom ax : axioms) {
            if (metadataTagIRI.equals(ax.getProperty().getIRI())) {
                return true;
            }
        }
        return false;
    }

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