Examples of org.sbml.jsbml.util.SimpleTreeNodeChangeListener

org.sbml.jsbml.util.SimpleTreeNodeChangeListener
This very simple implementation of an {@link TreeNodeChangeListener} writes allthe events to the standard out stream. @author Andreas Dräger @date 2010-11-16 @since 0.8 @version $Rev: 1524 $

   * @throws XMLStreamException 
   * @throws IOException 
   */
  public static void main(String[] args) throws XMLStreamException, IOException {
    System.setProperty("log4j.configuration", System.getProperty("user.dir") + "/log4j.properties");
    SBMLWriter.write(SBMLReader.read(new File(args[0]),  new SimpleTreeNodeChangeListener()), System.out, ' ', (short) 2);
  }

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   * @param xmlEventReader
   * @return
   * @throws XMLStreamException
   */
  public SBMLDocument readSBML(XMLEventReader xmlEventReader) throws XMLStreamException {
    return readSBML(xmlEventReader, new SimpleTreeNodeChangeListener());
  }

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   * @param mathML
   * @return
   * @throws XMLStreamException 
   */
  public ASTNode readMathML(String mathML) throws XMLStreamException {
    return readMathML(mathML, new SimpleTreeNodeChangeListener());
  }

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   * @param notesXHTML
   * @return
   * @throws XMLStreamException 
   */
  public XMLNode readNotes(String notesXHTML) throws XMLStreamException {
    return readNotes(notesXHTML, new SimpleTreeNodeChangeListener());
  }

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   * @param stream
   * @return
   * @throws XMLStreamException 
   */
  public SBMLDocument readSBMLFromStream(InputStream stream) throws XMLStreamException {
    return readSBMLFromStream(stream, new SimpleTreeNodeChangeListener());
  }

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          SBMLDocument sbmlDocument = new SBMLDocument();


          // the output of the change listener is activated or not via log4j.properties
          sbmlDocument.addTreeNodeChangeListener(listener == null
              ? new SimpleTreeNodeChangeListener() : listener);


          for (@SuppressWarnings("unchecked")
              Iterator<Attribute> iterator = startElement.getAttributes(); iterator.hasNext();) 
          {
            Attribute attr = iterator.next();

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   * @param xml
   * @return
   * @throws XMLStreamException 
   */
  public SBMLDocument readSBMLFromString(String xml) throws XMLStreamException {
    return readSBMLFromString(xml, new SimpleTreeNodeChangeListener());
  }

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   * @throws XMLStreamException if any other problems prevent to create a {@link SBMLDocument} 
   * @throws IOException if the file does not exist or cannot be read.
   * 
   */
  public SBMLDocument readSBML(File file) throws XMLStreamException, IOException {
    return readSBML(file, new SimpleTreeNodeChangeListener());
  }

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   */
  public static void main(String[] args) throws XMLStreamException,
      SBMLException, ParseException {
        
    SBMLDocument doc = new SBMLDocument(2, 4);
    doc.addTreeNodeChangeListener(new SimpleTreeNodeChangeListener());
    Model model = doc.createModel("test_model");
    
    Creator c = new Creator("Hans", "Wurst",
      "Institute for Interesting Biology", "ovidiu.radulescu@univ-rennes1.fr");
    History h = new History();

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   * @throws XMLStreamException if any other problems prevent to create a {@link SBMLDocument} 
   * @throws IOException if the file does not exist or cannot be read.
   * 
   */
  public SBMLDocument readSBML(File file) throws XMLStreamException, IOException {
    return readSBML(file, new SimpleTreeNodeChangeListener());
  }

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Related Classes of org.sbml.jsbml.util.SimpleTreeNodeChangeListener

org.sbml.jsbml.SBMLReader

org.sbml.jsbml.test.T1

org.sbml.jsbml.test.Test

org.sbml.jsbml.test.ToyModelTest

org.sbml.jsbml.xml.stax.SBMLReader

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