Package org.sbml.jsbml.util

Examples of org.sbml.jsbml.util.SimpleTreeNodeChangeListener

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   * @param stream
   * @return
   * @throws XMLStreamException
   */
  public SBMLDocument readSBMLFromStream(InputStream stream) throws XMLStreamException {
    return readSBMLFromStream(stream, new SimpleTreeNodeChangeListener());
  }
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          SBMLDocument sbmlDocument = new SBMLDocument();

          // the output of the change listener is activated or not via log4j.properties
          sbmlDocument.addTreeNodeChangeListener(listener == null
              ? new SimpleTreeNodeChangeListener() : listener);

          for (@SuppressWarnings("unchecked")
              Iterator<Attribute> iterator = startElement.getAttributes(); iterator.hasNext();)
          {
            Attribute attr = iterator.next();
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   * @param xml
   * @return
   * @throws XMLStreamException
   */
  public SBMLDocument readSBMLFromString(String xml) throws XMLStreamException {
    return readSBMLFromString(xml, new SimpleTreeNodeChangeListener());
  }
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   * @throws XMLStreamException
   */
  public static void main(String[] args) throws XMLStreamException,
      SBMLException {
    SBMLDocument doc = new SBMLDocument(2, 4);
    doc.addTreeNodeChangeListener(new SimpleTreeNodeChangeListener());
    Model model = doc.createModel("test_model");
   
    Parameter k1 = model.createParameter("k1");
    Parameter k2 = model.createParameter("k2");

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   * @throws XMLStreamException if any other problems prevent to create a {@link SBMLDocument}
   * @throws IOException if the file does not exist or cannot be read.
   *
   */
  public SBMLDocument readSBML(File file) throws XMLStreamException, IOException {
    return readSBML(file, new SimpleTreeNodeChangeListener());
  }
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Related Classes of org.sbml.jsbml.util.SimpleTreeNodeChangeListener

  • org.sbml.jsbml.SBMLReader
  • org.sbml.jsbml.test.T1
  • org.sbml.jsbml.test.Test
  • org.sbml.jsbml.test.ToyModelTest
  • org.sbml.jsbml.xml.stax.SBMLReader
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